miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 5' -57.2 NC_003521.1 + 232393 0.66 0.933046
Target:  5'- gUCUCGcGCuGGCuGCGCCUGcGGCAc- -3'
miRNA:   3'- -AGAGUaCGcCUGuUGCGGGC-CCGUag -5'
14630 5' -57.2 NC_003521.1 + 229265 0.66 0.937803
Target:  5'- -gUCcgGCGcacGACGGCGCCgGaGGCGUa -3'
miRNA:   3'- agAGuaCGC---CUGUUGCGGgC-CCGUAg -5'
14630 5' -57.2 NC_003521.1 + 228249 1.09 0.003246
Target:  5'- uUCUCAUGCGGACAACGCCCGGGCAUCu -3'
miRNA:   3'- -AGAGUACGCCUGUUGCGGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 224798 0.69 0.819429
Target:  5'- -gUCGUGCGGgacgcGCGugGCguaGGGCGUCu -3'
miRNA:   3'- agAGUACGCC-----UGUugCGgg-CCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 224678 0.7 0.757783
Target:  5'- cUUCA-GCGucuuGGCGugGCGCCCGGGCGUg -3'
miRNA:   3'- aGAGUaCGC----CUGU--UGCGGGCCCGUAg -5'
14630 5' -57.2 NC_003521.1 + 224081 0.69 0.819429
Target:  5'- cCUCcgGCGGGCGcgcGCGCCgGcGGUcgCc -3'
miRNA:   3'- aGAGuaCGCCUGU---UGCGGgC-CCGuaG- -5'
14630 5' -57.2 NC_003521.1 + 223204 0.69 0.792934
Target:  5'- cCUCccaGCGGguucguauacgccGCGACGCCUGGcGCGUCc -3'
miRNA:   3'- aGAGua-CGCC-------------UGUUGCGGGCC-CGUAG- -5'
14630 5' -57.2 NC_003521.1 + 218199 0.69 0.784988
Target:  5'- -aUgGUGCGGugGGUGuCCCGGGCAa- -3'
miRNA:   3'- agAgUACGCCugUUGC-GGGCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 216288 0.68 0.858858
Target:  5'- gCUCGUggaGCGGACGACGUUggCGGGgGUg -3'
miRNA:   3'- aGAGUA---CGCCUGUUGCGG--GCCCgUAg -5'
14630 5' -57.2 NC_003521.1 + 202062 0.71 0.709511
Target:  5'- cCUCAgcaugGCGGACGACagaccgggacgggGCCCGGcGCcUCu -3'
miRNA:   3'- aGAGUa----CGCCUGUUG-------------CGGGCC-CGuAG- -5'
14630 5' -57.2 NC_003521.1 + 198261 0.72 0.671461
Target:  5'- aCUCGgccGcCGGACAGCcagCCGGGCGUCg -3'
miRNA:   3'- aGAGUa--C-GCCUGUUGcg-GGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 197660 0.7 0.766966
Target:  5'- gCUCGUGCGGcaGCAGCGCCaccaGcGCGUg -3'
miRNA:   3'- aGAGUACGCC--UGUUGCGGg---CcCGUAg -5'
14630 5' -57.2 NC_003521.1 + 195846 0.69 0.819429
Target:  5'- aUCUCGcGCGG-CAGgGUUCGGGgAUCg -3'
miRNA:   3'- -AGAGUaCGCCuGUUgCGGGCCCgUAG- -5'
14630 5' -57.2 NC_003521.1 + 195746 0.66 0.937803
Target:  5'- aUCgggCAcGCGGAaGAUGUCCGGGUuUCc -3'
miRNA:   3'- -AGa--GUaCGCCUgUUGCGGGCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 194724 0.67 0.892877
Target:  5'- gUC-CGgagGCGGcgcuacaaggucuGCGACG-CCGGGCGUCg -3'
miRNA:   3'- -AGaGUa--CGCC-------------UGUUGCgGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 194156 0.7 0.748496
Target:  5'- cCUCG-GCGGGCGGuuccauCGCCCGGGUu-- -3'
miRNA:   3'- aGAGUaCGCCUGUU------GCGGGCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 184021 0.66 0.928066
Target:  5'- aCUCGUucGCGcGCGACGCCgguUGGGCGg- -3'
miRNA:   3'- aGAGUA--CGCcUGUUGCGG---GCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 183012 0.66 0.917436
Target:  5'- cUUCAUGCGG-CAGC---UGGGCGUCg -3'
miRNA:   3'- aGAGUACGCCuGUUGcggGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 182169 0.69 0.82766
Target:  5'- aCUCGUGaCGGACGgccgGCGCgUGGGgAUUc -3'
miRNA:   3'- aGAGUAC-GCCUGU----UGCGgGCCCgUAG- -5'
14630 5' -57.2 NC_003521.1 + 178785 0.69 0.82766
Target:  5'- gUCUCGuuguUGCaGGACgGGCcCCCGGGCAccUCg -3'
miRNA:   3'- -AGAGU----ACG-CCUG-UUGcGGGCCCGU--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.