Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 155277 | 0.7 | 0.766966 |
Target: 5'- cCUCAggcccgucGCuGGGCAACGCCaUGGGCuUCg -3' miRNA: 3'- aGAGUa-------CG-CCUGUUGCGG-GCCCGuAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 34283 | 0.69 | 0.82766 |
Target: 5'- -gUCAcGgGGGCGG-GCCaCGGGCGUCa -3' miRNA: 3'- agAGUaCgCCUGUUgCGG-GCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 224081 | 0.69 | 0.819429 |
Target: 5'- cCUCcgGCGGGCGcgcGCGCCgGcGGUcgCc -3' miRNA: 3'- aGAGuaCGCCUGU---UGCGGgC-CCGuaG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 115646 | 0.69 | 0.819429 |
Target: 5'- gCUCGUGCGuGuCGGCGCCCcaguGGCGg- -3' miRNA: 3'- aGAGUACGC-CuGUUGCGGGc---CCGUag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 112984 | 0.69 | 0.802497 |
Target: 5'- gCUCAgcgGCGGGCGccACuaccaCCCGGGCAccuUCg -3' miRNA: 3'- aGAGUa--CGCCUGU--UGc----GGGCCCGU---AG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 99504 | 0.69 | 0.802497 |
Target: 5'- aCUCGUGCcgcuGGAgGGCGCCCaGG-AUCa -3' miRNA: 3'- aGAGUACG----CCUgUUGCGGGcCCgUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 182169 | 0.69 | 0.82766 |
Target: 5'- aCUCGUGaCGGACGgccgGCGCgUGGGgAUUc -3' miRNA: 3'- aGAGUAC-GCCUGU----UGCGgGCCCgUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 96795 | 0.69 | 0.802497 |
Target: 5'- -----aGCGG-CGGCGCUCGGGCAcgaUCg -3' miRNA: 3'- agaguaCGCCuGUUGCGGGCCCGU---AG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 224798 | 0.69 | 0.819429 |
Target: 5'- -gUCGUGCGGgacgcGCGugGCguaGGGCGUCu -3' miRNA: 3'- agAGUACGCC-----UGUugCGgg-CCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 223204 | 0.69 | 0.792934 |
Target: 5'- cCUCccaGCGGguucguauacgccGCGACGCCUGGcGCGUCc -3' miRNA: 3'- aGAGua-CGCC-------------UGUUGCGGGCC-CGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 13866 | 0.69 | 0.791178 |
Target: 5'- gUCUC-UGCGGGCGGCGCcgccauggauuucgCCGGGgGg- -3' miRNA: 3'- -AGAGuACGCCUGUUGCG--------------GGCCCgUag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 12548 | 0.69 | 0.825208 |
Target: 5'- --cCGUGgaGGACGccgagcgucuggagAUGCCCGGGCGUUg -3' miRNA: 3'- agaGUACg-CCUGU--------------UGCGGGCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 195846 | 0.69 | 0.819429 |
Target: 5'- aUCUCGcGCGG-CAGgGUUCGGGgAUCg -3' miRNA: 3'- -AGAGUaCGCCuGUUgCGGGCCCgUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 178785 | 0.69 | 0.82766 |
Target: 5'- gUCUCGuuguUGCaGGACgGGCcCCCGGGCAccUCg -3' miRNA: 3'- -AGAGU----ACG-CCUG-UUGcGGGCCCGU--AG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 218199 | 0.69 | 0.784988 |
Target: 5'- -aUgGUGCGGugGGUGuCCCGGGCAa- -3' miRNA: 3'- agAgUACGCCugUUGC-GGGCCCGUag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 62411 | 0.68 | 0.858858 |
Target: 5'- cCUCG-GCGGcuacCAGUGUCUGGGCAUCu -3' miRNA: 3'- aGAGUaCGCCu---GUUGCGGGCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 119032 | 0.68 | 0.873332 |
Target: 5'- aUUCGgauaggGCGGGCGGCGUCgGGGUg-- -3' miRNA: 3'- aGAGUa-----CGCCUGUUGCGGgCCCGuag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 216288 | 0.68 | 0.858858 |
Target: 5'- gCUCGUggaGCGGACGACGUUggCGGGgGUg -3' miRNA: 3'- aGAGUA---CGCCUGUUGCGG--GCCCgUAg -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 74216 | 0.68 | 0.833324 |
Target: 5'- gUCUUcUGCcacguccugcgacaGGugGGCGUCaCGGGCAUCu -3' miRNA: 3'- -AGAGuACG--------------CCugUUGCGG-GCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 156623 | 0.68 | 0.866193 |
Target: 5'- cCUgGUGCuGcGCGACGCCCuGGGCuUCc -3' miRNA: 3'- aGAgUACGcC-UGUUGCGGG-CCCGuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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