miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 3' -53.6 NC_003521.1 + 136941 0.67 0.980466
Target:  5'- cGCGCGGcaGCccaucccccugUCGGCGcugaucgccagccUGGAcGAGGCCg -3'
miRNA:   3'- uCGUGCU--UG-----------AGCCGC-------------ACUUuCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 33094 0.67 0.979393
Target:  5'- uGCACGGGCUccagccagccgaugaCGGCGU---AGcGGGCCu -3'
miRNA:   3'- uCGUGCUUGA---------------GCCGCAcuuUC-UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 88292 0.67 0.978503
Target:  5'- uGCACGAACU-GGCGc---AG-GGCCg -3'
miRNA:   3'- uCGUGCUUGAgCCGCacuuUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 123349 0.67 0.978503
Target:  5'- aGGCcCGucGC-CgGGUGUGGAGGAGGCg -3'
miRNA:   3'- -UCGuGCu-UGaG-CCGCACUUUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 36664 0.67 0.978503
Target:  5'- gAGUACGuggggguCUCGGCc-GAGcuGAGGCCg -3'
miRNA:   3'- -UCGUGCuu-----GAGCCGcaCUUu-CUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 30181 0.67 0.978503
Target:  5'- cGCAUGAGCgcgCGGU-UGAcguAGAaGGCCg -3'
miRNA:   3'- uCGUGCUUGa--GCCGcACUu--UCU-CCGG- -5'
14631 3' -53.6 NC_003521.1 + 160448 0.67 0.978503
Target:  5'- aGGCGCGAcgGCaCGGCagaggaugauGUGGgagGAGAGGCg -3'
miRNA:   3'- -UCGUGCU--UGaGCCG----------CACU---UUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 210407 0.67 0.978503
Target:  5'- cAGCugGGACcgcagcguggUCGGCGUGGGcggcGAcGGCa -3'
miRNA:   3'- -UCGugCUUG----------AGCCGCACUUu---CU-CCGg -5'
14631 3' -53.6 NC_003521.1 + 84186 0.67 0.977115
Target:  5'- gAGCACGAAgaggaagccCagGGCGUcgcgcagcaccaggcGcGAGAGGCCg -3'
miRNA:   3'- -UCGUGCUU---------GagCCGCA---------------CuUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 112089 0.67 0.976154
Target:  5'- gGGCuCGGGCgccaagaucagCGGCGUGAugguGAGcacGGCCa -3'
miRNA:   3'- -UCGuGCUUGa----------GCCGCACU----UUCu--CCGG- -5'
14631 3' -53.6 NC_003521.1 + 164463 0.67 0.976154
Target:  5'- gAGCAUGAAg--GGCGUGGAccuggugcgcaAGAcGGCCu -3'
miRNA:   3'- -UCGUGCUUgagCCGCACUU-----------UCU-CCGG- -5'
14631 3' -53.6 NC_003521.1 + 137009 0.67 0.976154
Target:  5'- cAGCGCGAGCU-GGCc-----GAGGCCc -3'
miRNA:   3'- -UCGUGCUUGAgCCGcacuuuCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 17180 0.67 0.976154
Target:  5'- cGCugGcAGCUgGGCaggcgcaucGUGGAcgccuaccagacGGAGGCCg -3'
miRNA:   3'- uCGugC-UUGAgCCG---------CACUU------------UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 97147 0.67 0.976154
Target:  5'- cGCACGccAGCUuccagUGGUcgugGUGGAAGAGGUCc -3'
miRNA:   3'- uCGUGC--UUGA-----GCCG----CACUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 112750 0.67 0.975164
Target:  5'- cAGCGCGAGCccaugggcggcaUCGGCGgcgcgucGGCCa -3'
miRNA:   3'- -UCGUGCUUG------------AGCCGCacuuucuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 44363 0.67 0.975164
Target:  5'- cGCugGGGCUgCGGCccacgcccGAGGCCg -3'
miRNA:   3'- uCGugCUUGA-GCCGcacuuu--CUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 102063 0.67 0.973622
Target:  5'- gAGCacuACGGugUUGGCGgGGAAG-GGCg -3'
miRNA:   3'- -UCG---UGCUugAGCCGCaCUUUCuCCGg -5'
14631 3' -53.6 NC_003521.1 + 139422 0.68 0.970901
Target:  5'- cGCACGGGCUCuccuGCGUGGccgucAAGcGGCg -3'
miRNA:   3'- uCGUGCUUGAGc---CGCACU-----UUCuCCGg -5'
14631 3' -53.6 NC_003521.1 + 174676 0.68 0.970901
Target:  5'- uGCGCGcGCUgCGG-GUGcGAGGGGUCc -3'
miRNA:   3'- uCGUGCuUGA-GCCgCACuUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 91988 0.68 0.970901
Target:  5'- cGGCACGcacCUCGGCc-GAGGGcAGGCg -3'
miRNA:   3'- -UCGUGCuu-GAGCCGcaCUUUC-UCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.