miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 3' -53.6 NC_003521.1 + 238457 0.66 0.984525
Target:  5'- cAGgGCGGcCUCGGCGggcgGGgcgGAGAcgcGGCCc -3'
miRNA:   3'- -UCgUGCUuGAGCCGCa---CU---UUCU---CCGG- -5'
14631 3' -53.6 NC_003521.1 + 224016 0.66 0.984525
Target:  5'- cAGCgGCGGGCcCGGCGgucgGGgcGGGcGCCg -3'
miRNA:   3'- -UCG-UGCUUGaGCCGCa---CUuuCUC-CGG- -5'
14631 3' -53.6 NC_003521.1 + 36885 0.66 0.984347
Target:  5'- gAGCGaGGGCgucaGGCagccgugGUGGAAGAGGCUu -3'
miRNA:   3'- -UCGUgCUUGag--CCG-------CACUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 214522 0.67 0.982681
Target:  5'- aAGCGCGGACa-GcGCGUGGcccuGGCCu -3'
miRNA:   3'- -UCGUGCUUGagC-CGCACUuucuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 66869 0.67 0.982681
Target:  5'- gGGCACGGugACUgUGGCcgagaccaGUGAcgAGGAGGCa -3'
miRNA:   3'- -UCGUGCU--UGA-GCCG--------CACU--UUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 128303 0.67 0.982681
Target:  5'- cGcCGCGGAaaUCGGUGUGGAagcggauaaAGGGGUCg -3'
miRNA:   3'- uC-GUGCUUg-AGCCGCACUU---------UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 110179 0.67 0.982681
Target:  5'- uAGCACagGAGgUUGGgGU---GGAGGCCg -3'
miRNA:   3'- -UCGUG--CUUgAGCCgCAcuuUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 120854 0.67 0.982681
Target:  5'- uGCugG-ACUCGGCcuuGAGGcGGCCg -3'
miRNA:   3'- uCGugCuUGAGCCGcacUUUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 163918 0.67 0.982681
Target:  5'- gGGUGCGGcgGCagCGGCaacGAAAGAGGCg -3'
miRNA:   3'- -UCGUGCU--UGa-GCCGca-CUUUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 64935 0.67 0.982681
Target:  5'- cGGUugGAAaaggaaUGGCa-GGAGGAGGCCg -3'
miRNA:   3'- -UCGugCUUga----GCCGcaCUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 105212 0.67 0.982681
Target:  5'- cGCccGCGAGCUgcgCGGCGUcaaGAAaaAGcGGGCCa -3'
miRNA:   3'- uCG--UGCUUGA---GCCGCA---CUU--UC-UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 128396 0.67 0.982488
Target:  5'- gGGCcgccugaGCGGGCgUCGGUccGAAAGGcGGCCg -3'
miRNA:   3'- -UCG-------UGCUUG-AGCCGcaCUUUCU-CCGG- -5'
14631 3' -53.6 NC_003521.1 + 147847 0.67 0.980676
Target:  5'- uGGUACGA--UCGGgGUugcuGGGGGGCCc -3'
miRNA:   3'- -UCGUGCUugAGCCgCAcu--UUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 203017 0.67 0.980676
Target:  5'- cGCcaagACGggUUCGGCGgugauagccggUGccaaaacagguAAAGAGGCCg -3'
miRNA:   3'- uCG----UGCuuGAGCCGC-----------AC-----------UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 204276 0.67 0.980676
Target:  5'- gAGCACagcaggaagaaGAGCUCGGCGcUGGAcGAuuugGGCg -3'
miRNA:   3'- -UCGUG-----------CUUGAGCCGC-ACUUuCU----CCGg -5'
14631 3' -53.6 NC_003521.1 + 54659 0.67 0.980676
Target:  5'- cGCACGAugUCcuGGcCGUGcacGcAGGCCg -3'
miRNA:   3'- uCGUGCUugAG--CC-GCACuuuC-UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 39445 0.67 0.980676
Target:  5'- cGGC-CGAGCcCGGCGcc-GAG-GGCCg -3'
miRNA:   3'- -UCGuGCUUGaGCCGCacuUUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 97043 0.67 0.980676
Target:  5'- gAGCACGuucaUgGGCGUGAugucgAAGuGGCa -3'
miRNA:   3'- -UCGUGCuug-AgCCGCACU-----UUCuCCGg -5'
14631 3' -53.6 NC_003521.1 + 193183 0.67 0.980676
Target:  5'- cGGCGgGAGCggCGgaGCGUGAagaagcgaGAGGGGCa -3'
miRNA:   3'- -UCGUgCUUGa-GC--CGCACU--------UUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 84598 0.67 0.980676
Target:  5'- uGguCGAccaGCUCGGCGUcGGu-GAcGGCCa -3'
miRNA:   3'- uCguGCU---UGAGCCGCA-CUuuCU-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.