miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 3' -53.6 NC_003521.1 + 240626 0.76 0.633575
Target:  5'- uGCGCGugucGCUUgccgcgGGCGUGcAGGGAGGCCg -3'
miRNA:   3'- uCGUGCu---UGAG------CCGCAC-UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 77 0.76 0.633575
Target:  5'- uGCGCGugucGCUUgccgcgGGCGUGcAGGGAGGCCg -3'
miRNA:   3'- uCGUGCu---UGAG------CCGCAC-UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 103527 0.78 0.542768
Target:  5'- cGCGCGAACUCGcucauggaggcguGCGUGggGaugacGGGGCCc -3'
miRNA:   3'- uCGUGCUUGAGC-------------CGCACuuU-----CUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 139087 0.79 0.505059
Target:  5'- gGGCugGAcuACguguUCGGCGUGAAGGAcGCCg -3'
miRNA:   3'- -UCGugCU--UG----AGCCGCACUUUCUcCGG- -5'
14631 3' -53.6 NC_003521.1 + 76239 0.79 0.505059
Target:  5'- cGCACGucCUCGaGCGUGAggcgcGAGAGGCg -3'
miRNA:   3'- uCGUGCuuGAGC-CGCACU-----UUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 83703 0.74 0.77074
Target:  5'- cGCGCGAGCg-GGCGUccAAGGGGUCc -3'
miRNA:   3'- uCGUGCUUGagCCGCAcuUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 58987 0.73 0.788978
Target:  5'- aGGCACugguGgUCGGCGUGguAGAGGUa -3'
miRNA:   3'- -UCGUGcu--UgAGCCGCACuuUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 34332 0.71 0.89797
Target:  5'- cGUugGAAg-CGGCGcagGgcGGAGGCCg -3'
miRNA:   3'- uCGugCUUgaGCCGCa--CuuUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 87348 0.71 0.891483
Target:  5'- cGGCcCGAGC-CGGagccCGaGGAGGAGGCCg -3'
miRNA:   3'- -UCGuGCUUGaGCC----GCaCUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 216239 0.71 0.877851
Target:  5'- aGGCcuACGAGCgggaGGUGgacGAGGAGGCCg -3'
miRNA:   3'- -UCG--UGCUUGag--CCGCac-UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 205180 0.71 0.877851
Target:  5'- uAGCugGugauCUCGGUaUGAGgguccGGAGGCCc -3'
miRNA:   3'- -UCGugCuu--GAGCCGcACUU-----UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 31672 0.71 0.870715
Target:  5'- aGGCGC-AGCUCGGCGUucuccagguGAAAGugGGGCg -3'
miRNA:   3'- -UCGUGcUUGAGCCGCA---------CUUUC--UCCGg -5'
14631 3' -53.6 NC_003521.1 + 126750 0.72 0.863371
Target:  5'- cAGCACGAACUgcagCGaCGUGAAguccGGcAGGCCc -3'
miRNA:   3'- -UCGUGCUUGA----GCcGCACUU----UC-UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 135788 0.72 0.863371
Target:  5'- uGGCGCugcgggaggagGAGCagCGGCG-GAGGGAGGCg -3'
miRNA:   3'- -UCGUG-----------CUUGa-GCCGCaCUUUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 157595 0.72 0.855826
Target:  5'- cGCGCGAGu---GCGUGcgGGAGGCCg -3'
miRNA:   3'- uCGUGCUUgagcCGCACuuUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 216295 0.72 0.852753
Target:  5'- gAGCggACGAcgUUGGCGggggugaugucggGAAAGAGGCCg -3'
miRNA:   3'- -UCG--UGCUugAGCCGCa------------CUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 110302 0.72 0.840153
Target:  5'- cAGCACGAAgUUGucGCGcUGGuAGGGGGCCu -3'
miRNA:   3'- -UCGUGCUUgAGC--CGC-ACU-UUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 239446 0.72 0.823749
Target:  5'- cAGCGCGGGCUCGGgGacagcGGuGGCCc -3'
miRNA:   3'- -UCGUGCUUGAGCCgCacuu-UCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 27448 0.73 0.80667
Target:  5'- aGGC-CGAAUUCGGcCGUGAGcgccAGGcuGGCCa -3'
miRNA:   3'- -UCGuGCUUGAGCC-GCACUU----UCU--CCGG- -5'
14631 3' -53.6 NC_003521.1 + 147470 0.73 0.80667
Target:  5'- uGGCGCGAca--GGcCGUGAAGGuGGCCc -3'
miRNA:   3'- -UCGUGCUugagCC-GCACUUUCuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.