miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 3' -53.6 NC_003521.1 + 58987 0.73 0.788978
Target:  5'- aGGCACugguGgUCGGCGUGguAGAGGUa -3'
miRNA:   3'- -UCGUGcu--UgAGCCGCACuuUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 62972 0.66 0.987613
Target:  5'- cGGCGCaagGAACcCGGCGaGAGuaaacauGGAGGCa -3'
miRNA:   3'- -UCGUG---CUUGaGCCGCaCUU-------UCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 64085 0.7 0.921655
Target:  5'- uGUGCGAGCcCGGCcUGGAGGcGGGCUu -3'
miRNA:   3'- uCGUGCUUGaGCCGcACUUUC-UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 64935 0.67 0.982681
Target:  5'- cGGUugGAAaaggaaUGGCa-GGAGGAGGCCg -3'
miRNA:   3'- -UCGugCUUga----GCCGcaCUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 66869 0.67 0.982681
Target:  5'- gGGCACGGugACUgUGGCcgagaccaGUGAcgAGGAGGCa -3'
miRNA:   3'- -UCGUGCU--UGA-GCCG--------CACU--UUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 68283 0.68 0.961541
Target:  5'- cAGCAUccAC-CaGGUGcUGGAGGAGGCCa -3'
miRNA:   3'- -UCGUGcuUGaG-CCGC-ACUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 70101 0.69 0.941654
Target:  5'- gGGCACcuGGC-CGGCGUGccgccGAAG-GGCCg -3'
miRNA:   3'- -UCGUGc-UUGaGCCGCAC-----UUUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 71254 0.69 0.95425
Target:  5'- cGcCACGAucccgccaACaUCGGCG-GAGgcGGGGGCCg -3'
miRNA:   3'- uC-GUGCU--------UG-AGCCGCaCUU--UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 73237 0.68 0.964867
Target:  5'- -cCACGAGCggcaacagcagCGGCGUGAcgacGAGcGCCg -3'
miRNA:   3'- ucGUGCUUGa----------GCCGCACUuu--CUC-CGG- -5'
14631 3' -53.6 NC_003521.1 + 74897 0.69 0.95425
Target:  5'- uGCGCGAGaCgguggCGGCgGUGGAGucGGCCc -3'
miRNA:   3'- uCGUGCUU-Ga----GCCG-CACUUUcuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 76239 0.79 0.505059
Target:  5'- cGCACGucCUCGaGCGUGAggcgcGAGAGGCg -3'
miRNA:   3'- uCGUGCuuGAGC-CGCACU-----UUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 78138 0.68 0.967985
Target:  5'- gGGCGCGuuAGCggCGGCGgccgcGAAcGAGGCa -3'
miRNA:   3'- -UCGUGC--UUGa-GCCGCa----CUUuCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 78534 0.75 0.6937
Target:  5'- -cCGCGGACUccCGGCGUGAcggugcAGAGGCUg -3'
miRNA:   3'- ucGUGCUUGA--GCCGCACUu-----UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 83238 0.68 0.964544
Target:  5'- cGGCGCacuugaccagaucGucCUUGGCGUGggGGAGcacGCCu -3'
miRNA:   3'- -UCGUG-------------CuuGAGCCGCACuuUCUC---CGG- -5'
14631 3' -53.6 NC_003521.1 + 83703 0.74 0.77074
Target:  5'- cGCGCGAGCg-GGCGUccAAGGGGUCc -3'
miRNA:   3'- uCGUGCUUGagCCGCAcuUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 84186 0.67 0.977115
Target:  5'- gAGCACGAAgaggaagccCagGGCGUcgcgcagcaccaggcGcGAGAGGCCg -3'
miRNA:   3'- -UCGUGCUU---------GagCCGCA---------------CuUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 84598 0.67 0.980676
Target:  5'- uGguCGAccaGCUCGGCGUcGGu-GAcGGCCa -3'
miRNA:   3'- uCguGCU---UGAGCCGCA-CUuuCU-CCGG- -5'
14631 3' -53.6 NC_003521.1 + 85521 0.69 0.937
Target:  5'- uGCAC---CUCGGCGUGcGAGAGGa- -3'
miRNA:   3'- uCGUGcuuGAGCCGCACuUUCUCCgg -5'
14631 3' -53.6 NC_003521.1 + 85599 0.69 0.953863
Target:  5'- -cCACGGACUCcaccgagGGCGcGAAGaGGGCCg -3'
miRNA:   3'- ucGUGCUUGAG-------CCGCaCUUUcUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 85741 0.71 0.89797
Target:  5'- cAGCgccGCGAACUUGGCcaUGAgcGAGGuGGCCa -3'
miRNA:   3'- -UCG---UGCUUGAGCCGc-ACU--UUCU-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.