miRNA display CGI


Results 21 - 40 of 215 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 3' -53.6 NC_003521.1 + 36774 0.68 0.966138
Target:  5'- cGCGCGuggccuGGCg-GGCGUGGAGGAcgcgccuuucgggcaGGCCg -3'
miRNA:   3'- uCGUGC------UUGagCCGCACUUUCU---------------CCGG- -5'
14631 3' -53.6 NC_003521.1 + 36885 0.66 0.984347
Target:  5'- gAGCGaGGGCgucaGGCagccgugGUGGAAGAGGCUu -3'
miRNA:   3'- -UCGUgCUUGag--CCG-------CACUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 38229 0.66 0.984525
Target:  5'- cAGgGCGGcCUCGGCGggcgGGgcgGAGAcgcGGCCc -3'
miRNA:   3'- -UCgUGCUuGAGCCGCa---CU---UUCU---CCGG- -5'
14631 3' -53.6 NC_003521.1 + 39218 0.72 0.823749
Target:  5'- cAGCGCGGGCUCGGgGacagcGGuGGCCc -3'
miRNA:   3'- -UCGUGCUUGAGCCgCacuu-UCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 39445 0.67 0.980676
Target:  5'- cGGC-CGAGCcCGGCGcc-GAG-GGCCg -3'
miRNA:   3'- -UCGuGCUUGaGCCGCacuUUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 40399 0.76 0.633575
Target:  5'- uGCGCGugucGCUUgccgcgGGCGUGcAGGGAGGCCg -3'
miRNA:   3'- uCGUGCu---UGAG------CCGCAC-UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 43124 0.7 0.904233
Target:  5'- uGCgGCGAgcGCUCGGCGcUGGGcguGGAGGUg -3'
miRNA:   3'- uCG-UGCU--UGAGCCGC-ACUU---UCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 44246 0.66 0.990447
Target:  5'- --gGCGAGCaggUCgGGCGUcGGGGAGGUCa -3'
miRNA:   3'- ucgUGCUUG---AG-CCGCAcUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 44363 0.67 0.975164
Target:  5'- cGCugGGGCUgCGGCccacgcccGAGGCCg -3'
miRNA:   3'- uCGugCUUGA-GCCGcacuuu--CUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 49969 0.66 0.984525
Target:  5'- gAGgACGAGCggCGG-GUGGgucGAGGGaGCCg -3'
miRNA:   3'- -UCgUGCUUGa-GCCgCACU---UUCUC-CGG- -5'
14631 3' -53.6 NC_003521.1 + 51194 0.68 0.970901
Target:  5'- uGgACGAugUCGGUGUGAcaauccgcGGGCUg -3'
miRNA:   3'- uCgUGCUugAGCCGCACUuuc-----UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 53253 0.73 0.797897
Target:  5'- aAGCccccGCGGACUUGGCGaaaaagaccUGAAGGAggacgGGCCg -3'
miRNA:   3'- -UCG----UGCUUGAGCCGC---------ACUUUCU-----CCGG- -5'
14631 3' -53.6 NC_003521.1 + 53355 0.69 0.932117
Target:  5'- cGGCGCGg---CGGCG---GAGGGGCCg -3'
miRNA:   3'- -UCGUGCuugaGCCGCacuUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 53851 0.69 0.95425
Target:  5'- cGCGCGAcggcguccucgGC-CGGCGUGuacGAGuGCCu -3'
miRNA:   3'- uCGUGCU-----------UGaGCCGCACuuuCUC-CGG- -5'
14631 3' -53.6 NC_003521.1 + 54137 0.74 0.77074
Target:  5'- uGCAUGcuGCUaccgcCGGCGUuGGAGAGGCCg -3'
miRNA:   3'- uCGUGCu-UGA-----GCCGCAcUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 54659 0.67 0.980676
Target:  5'- cGCACGAugUCcuGGcCGUGcacGcAGGCCg -3'
miRNA:   3'- uCGUGCUugAG--CC-GCACuuuC-UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 54755 0.66 0.990325
Target:  5'- uGCACguaGAACUUGGUGagguccuUGcuGGAGGUCa -3'
miRNA:   3'- uCGUG---CUUGAGCCGC-------ACuuUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 55425 0.66 0.987312
Target:  5'- cGCACGAGaccuccacgucguuCUggaucugggCGGCGcgcUGGAAGAGGCa -3'
miRNA:   3'- uCGUGCUU--------------GA---------GCCGC---ACUUUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 56236 0.69 0.946078
Target:  5'- uGGCACGaugccAugUCGGgGcUGAGGcAGGCCg -3'
miRNA:   3'- -UCGUGC-----UugAGCCgC-ACUUUcUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 57185 0.69 0.955778
Target:  5'- cAGCACGAAg-CGGCGcagGGAgucaucgcacaacucGGAGGCg -3'
miRNA:   3'- -UCGUGCUUgaGCCGCa--CUU---------------UCUCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.