miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 3' -53.6 NC_003521.1 + 213385 0.76 0.653705
Target:  5'- cGGC-CGAAUUCGGCcUGGGcugccuGGAGGCCu -3'
miRNA:   3'- -UCGuGCUUGAGCCGcACUU------UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 213185 0.66 0.991604
Target:  5'- uGCGCGggUaaGGaugGAAGGGGGUCg -3'
miRNA:   3'- uCGUGCuuGagCCgcaCUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 213120 0.66 0.986216
Target:  5'- cGCugGGugU-GGCGUGGu-GcGGCCg -3'
miRNA:   3'- uCGugCUugAgCCGCACUuuCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 211719 0.66 0.991604
Target:  5'- cGCGCGGAUggugCGGC--GAAAGuGcGCCa -3'
miRNA:   3'- uCGUGCUUGa---GCCGcaCUUUCuC-CGG- -5'
14631 3' -53.6 NC_003521.1 + 210407 0.67 0.978503
Target:  5'- cAGCugGGACcgcagcguggUCGGCGUGGGcggcGAcGGCa -3'
miRNA:   3'- -UCGugCUUG----------AGCCGCACUUu---CU-CCGg -5'
14631 3' -53.6 NC_003521.1 + 207688 0.68 0.958004
Target:  5'- cGGCuuCGucaUCGGCGUGcuGGAGAaGGCCc -3'
miRNA:   3'- -UCGu-GCuugAGCCGCAC--UUUCU-CCGG- -5'
14631 3' -53.6 NC_003521.1 + 205180 0.71 0.877851
Target:  5'- uAGCugGugauCUCGGUaUGAGgguccGGAGGCCc -3'
miRNA:   3'- -UCGugCuu--GAGCCGcACUU-----UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 204778 0.66 0.986216
Target:  5'- cGGCgGCGGGCUuaCGGCGa-AGAG-GGCCa -3'
miRNA:   3'- -UCG-UGCUUGA--GCCGCacUUUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 204276 0.67 0.980676
Target:  5'- gAGCACagcaggaagaaGAGCUCGGCGcUGGAcGAuuugGGCg -3'
miRNA:   3'- -UCGUG-----------CUUGAGCCGC-ACUUuCU----CCGg -5'
14631 3' -53.6 NC_003521.1 + 203017 0.67 0.980676
Target:  5'- cGCcaagACGggUUCGGCGgugauagccggUGccaaaacagguAAAGAGGCCg -3'
miRNA:   3'- uCG----UGCuuGAGCCGC-----------AC-----------UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 202154 0.69 0.941654
Target:  5'- uAGCGaaGACUCGGacagcGAGGAGGCCa -3'
miRNA:   3'- -UCGUgcUUGAGCCgcac-UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 198726 0.73 0.81529
Target:  5'- cGCGCGGGCUUGGUGccAGAcGAGGUCu -3'
miRNA:   3'- uCGUGCUUGAGCCGCacUUU-CUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 197353 0.66 0.990325
Target:  5'- cAGCACGGccgccgcGCU-GGCccgcuGUGAGAGuuccaGGGCCg -3'
miRNA:   3'- -UCGUGCU-------UGAgCCG-----CACUUUC-----UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 195220 0.73 0.779923
Target:  5'- cGGCGCuGAugUCGGUGcUGGuuGuAGGCCa -3'
miRNA:   3'- -UCGUG-CUugAGCCGC-ACUuuC-UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 194928 0.68 0.961541
Target:  5'- uGCugGuGCUCGGCGUcGucuuGGAcGCCg -3'
miRNA:   3'- uCGugCuUGAGCCGCA-Cuu--UCUcCGG- -5'
14631 3' -53.6 NC_003521.1 + 193294 0.7 0.91027
Target:  5'- gGGCGuCGGAgUCGGCGcGggGGuGGUg -3'
miRNA:   3'- -UCGU-GCUUgAGCCGCaCuuUCuCCGg -5'
14631 3' -53.6 NC_003521.1 + 193183 0.67 0.980676
Target:  5'- cGGCGgGAGCggCGgaGCGUGAagaagcgaGAGGGGCa -3'
miRNA:   3'- -UCGUgCUUGa-GC--CGCACU--------UUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 193123 0.66 0.984525
Target:  5'- cGUGCGAAgUCGGaaGUGcagaGGGGAGGCUc -3'
miRNA:   3'- uCGUGCUUgAGCCg-CAC----UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 191378 0.75 0.683755
Target:  5'- aAGCGCGcAgaCGGCGUGGAGGAccaGGCUc -3'
miRNA:   3'- -UCGUGCuUgaGCCGCACUUUCU---CCGG- -5'
14631 3' -53.6 NC_003521.1 + 188257 0.7 0.927002
Target:  5'- cGCGCGAcgucuucuGC-CGGCGUcugcgGAagaaGAGGGGCCu -3'
miRNA:   3'- uCGUGCU--------UGaGCCGCA-----CU----UUCUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.