miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 3' -53.6 NC_003521.1 + 240626 0.76 0.633575
Target:  5'- uGCGCGugucGCUUgccgcgGGCGUGcAGGGAGGCCg -3'
miRNA:   3'- uCGUGCu---UGAG------CCGCAC-UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 239446 0.72 0.823749
Target:  5'- cAGCGCGGGCUCGGgGacagcGGuGGCCc -3'
miRNA:   3'- -UCGUGCUUGAGCCgCacuu-UCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 238516 0.7 0.921655
Target:  5'- cGGCGCGAGCa-GGUGcGAGAGcucgucGGCCa -3'
miRNA:   3'- -UCGUGCUUGagCCGCaCUUUCu-----CCGG- -5'
14631 3' -53.6 NC_003521.1 + 238457 0.66 0.984525
Target:  5'- cAGgGCGGcCUCGGCGggcgGGgcgGAGAcgcGGCCc -3'
miRNA:   3'- -UCgUGCUuGAGCCGCa---CU---UUCU---CCGG- -5'
14631 3' -53.6 NC_003521.1 + 232414 0.68 0.970901
Target:  5'- cGGCACGGcaACgccagCGccuGCGUGucGGAGGUCg -3'
miRNA:   3'- -UCGUGCU--UGa----GC---CGCACuuUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 228437 1.13 0.004555
Target:  5'- cAGCACGAACUCGGCGUGAAAGAGGCCg -3'
miRNA:   3'- -UCGUGCUUGAGCCGCACUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 226151 0.68 0.961197
Target:  5'- cAGCgGCGGcACUCGGCGUcguucagcgcgcaGAA--GGGCCa -3'
miRNA:   3'- -UCG-UGCU-UGAGCCGCA-------------CUUucUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 224838 0.74 0.732897
Target:  5'- cGGUagAUGGACUCGGUGU-AGAGcAGGCCg -3'
miRNA:   3'- -UCG--UGCUUGAGCCGCAcUUUC-UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 224016 0.66 0.984525
Target:  5'- cAGCgGCGGGCcCGGCGgucgGGgcGGGcGCCg -3'
miRNA:   3'- -UCG-UGCUUGaGCCGCa---CUuuCUC-CGG- -5'
14631 3' -53.6 NC_003521.1 + 222810 0.68 0.961541
Target:  5'- uAGCGCG-GCUCGGUGgugGAAAacGGCg -3'
miRNA:   3'- -UCGUGCuUGAGCCGCa--CUUUcuCCGg -5'
14631 3' -53.6 NC_003521.1 + 222000 0.68 0.967682
Target:  5'- gGGCAUGug--CGGCGUGGgcGGGAagcacuuGGCCa -3'
miRNA:   3'- -UCGUGCuugaGCCGCACU--UUCU-------CCGG- -5'
14631 3' -53.6 NC_003521.1 + 221879 0.7 0.927002
Target:  5'- cGCugGggUagGGCGUGu--GGGGCg -3'
miRNA:   3'- uCGugCuuGagCCGCACuuuCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 218788 0.66 0.986377
Target:  5'- gGGCGCGGAaaacaguccgucuuaUCGGCGUc--GGGGuGCCg -3'
miRNA:   3'- -UCGUGCUUg--------------AGCCGCAcuuUCUC-CGG- -5'
14631 3' -53.6 NC_003521.1 + 218423 0.66 0.991604
Target:  5'- cAGCAUGGccaGCgacagCGGCGgcaccacGGAGGAcauGGCCg -3'
miRNA:   3'- -UCGUGCU---UGa----GCCGCa------CUUUCU---CCGG- -5'
14631 3' -53.6 NC_003521.1 + 217832 0.68 0.964867
Target:  5'- gGGUACGAGugugucgucuCUCGGgGgggGggGGGGGUUg -3'
miRNA:   3'- -UCGUGCUU----------GAGCCgCa--CuuUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 217625 0.69 0.937
Target:  5'- cGGC-CGccaucucCUCGGCGUGGucGGGGGGCa -3'
miRNA:   3'- -UCGuGCuu-----GAGCCGCACU--UUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 216295 0.72 0.852753
Target:  5'- gAGCggACGAcgUUGGCGggggugaugucggGAAAGAGGCCg -3'
miRNA:   3'- -UCG--UGCUugAGCCGCa------------CUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 216239 0.71 0.877851
Target:  5'- aGGCcuACGAGCgggaGGUGgacGAGGAGGCCg -3'
miRNA:   3'- -UCG--UGCUUGag--CCGCac-UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 216106 0.74 0.742507
Target:  5'- gAGCAUGAACUgguugagcgCGGCGc---GGAGGCCg -3'
miRNA:   3'- -UCGUGCUUGA---------GCCGCacuuUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 214522 0.67 0.982681
Target:  5'- aAGCGCGGACa-GcGCGUGGcccuGGCCu -3'
miRNA:   3'- -UCGUGCUUGagC-CGCACUuucuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.