miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 3' -53.6 NC_003521.1 + 216295 0.72 0.852753
Target:  5'- gAGCggACGAcgUUGGCGggggugaugucggGAAAGAGGCCg -3'
miRNA:   3'- -UCG--UGCUugAGCCGCa------------CUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 136594 0.74 0.761437
Target:  5'- uGCuCGAucACUCGGCacucucGUGcGAGGAGGCCg -3'
miRNA:   3'- uCGuGCU--UGAGCCG------CAC-UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 54137 0.74 0.77074
Target:  5'- uGCAUGcuGCUaccgcCGGCGUuGGAGAGGCCg -3'
miRNA:   3'- uCGUGCu-UGA-----GCCGCAcUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 83703 0.74 0.77074
Target:  5'- cGCGCGAGCg-GGCGUccAAGGGGUCc -3'
miRNA:   3'- uCGUGCUUGagCCGCAcuUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 58987 0.73 0.788978
Target:  5'- aGGCACugguGgUCGGCGUGguAGAGGUa -3'
miRNA:   3'- -UCGUGcu--UgAGCCGCACuuUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 147470 0.73 0.80667
Target:  5'- uGGCGCGAca--GGcCGUGAAGGuGGCCc -3'
miRNA:   3'- -UCGUGCUugagCC-GCACUUUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 27448 0.73 0.80667
Target:  5'- aGGC-CGAAUUCGGcCGUGAGcgccAGGcuGGCCa -3'
miRNA:   3'- -UCGuGCUUGAGCC-GCACUU----UCU--CCGG- -5'
14631 3' -53.6 NC_003521.1 + 239446 0.72 0.823749
Target:  5'- cAGCGCGGGCUCGGgGacagcGGuGGCCc -3'
miRNA:   3'- -UCGUGCUUGAGCCgCacuu-UCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 110302 0.72 0.840153
Target:  5'- cAGCACGAAgUUGucGCGcUGGuAGGGGGCCu -3'
miRNA:   3'- -UCGUGCUUgAGC--CGC-ACU-UUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 216106 0.74 0.742507
Target:  5'- gAGCAUGAACUgguugagcgCGGCGc---GGAGGCCg -3'
miRNA:   3'- -UCGUGCUUGA---------GCCGCacuuUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 148648 0.74 0.742507
Target:  5'- cGGCccCGAGCUCGGCGgGGAu--GGCCg -3'
miRNA:   3'- -UCGu-GCUUGAGCCGCaCUUucuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 224838 0.74 0.732897
Target:  5'- cGGUagAUGGACUCGGUGU-AGAGcAGGCCg -3'
miRNA:   3'- -UCG--UGCUUGAGCCGCAcUUUC-UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 76239 0.79 0.505059
Target:  5'- cGCACGucCUCGaGCGUGAggcgcGAGAGGCg -3'
miRNA:   3'- uCGUGCuuGAGC-CGCACU-----UUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 139087 0.79 0.505059
Target:  5'- gGGCugGAcuACguguUCGGCGUGAAGGAcGCCg -3'
miRNA:   3'- -UCGugCU--UG----AGCCGCACUUUCUcCGG- -5'
14631 3' -53.6 NC_003521.1 + 103527 0.78 0.542768
Target:  5'- cGCGCGAACUCGcucauggaggcguGCGUGggGaugacGGGGCCc -3'
miRNA:   3'- uCGUGCUUGAGC-------------CGCACuuU-----CUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 77 0.76 0.633575
Target:  5'- uGCGCGugucGCUUgccgcgGGCGUGcAGGGAGGCCg -3'
miRNA:   3'- uCGUGCu---UGAG------CCGCAC-UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 240626 0.76 0.633575
Target:  5'- uGCGCGugucGCUUgccgcgGGCGUGcAGGGAGGCCg -3'
miRNA:   3'- uCGUGCu---UGAG------CCGCAC-UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 191378 0.75 0.683755
Target:  5'- aAGCGCGcAgaCGGCGUGGAGGAccaGGCUc -3'
miRNA:   3'- -UCGUGCuUgaGCCGCACUUUCU---CCGG- -5'
14631 3' -53.6 NC_003521.1 + 150767 0.75 0.713433
Target:  5'- -cCGCGAGCgcgUCGGCGUcccgGAGcuGGAGGCCg -3'
miRNA:   3'- ucGUGCUUG---AGCCGCA----CUU--UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 109688 0.75 0.714413
Target:  5'- cAGCAgguaGAGCUCcuGGCGggcgaaggccgagagGAAGGAGGCCa -3'
miRNA:   3'- -UCGUg---CUUGAG--CCGCa--------------CUUUCUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.