miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 3' -53.6 NC_003521.1 + 186755 0.78 0.514627
Target:  5'- uGCugGGGCUCGGCGgcaucGgcGGAGGCg -3'
miRNA:   3'- uCGugCUUGAGCCGCa----CuuUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 198726 0.73 0.81529
Target:  5'- cGCGCGGGCUUGGUGccAGAcGAGGUCu -3'
miRNA:   3'- uCGUGCUUGAGCCGCacUUU-CUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 13895 0.72 0.823749
Target:  5'- cGCcgGgGGGCcCGGCGcGGAGGGGGCCg -3'
miRNA:   3'- uCG--UgCUUGaGCCGCaCUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 213185 0.66 0.991604
Target:  5'- uGCGCGggUaaGGaugGAAGGGGGUCg -3'
miRNA:   3'- uCGUGCuuGagCCgcaCUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 111091 0.77 0.593359
Target:  5'- cGGCGCGGacgcGCUCGGCGUcGAc--GGGCCg -3'
miRNA:   3'- -UCGUGCU----UGAGCCGCA-CUuucUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 40399 0.76 0.633575
Target:  5'- uGCGCGugucGCUUgccgcgGGCGUGcAGGGAGGCCg -3'
miRNA:   3'- uCGUGCu---UGAG------CCGCAC-UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 102728 0.75 0.673769
Target:  5'- gAGCACGcagacCUCGGCcUGGGAG-GGCCa -3'
miRNA:   3'- -UCGUGCuu---GAGCCGcACUUUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 78534 0.75 0.6937
Target:  5'- -cCGCGGACUccCGGCGUGAcggugcAGAGGCUg -3'
miRNA:   3'- ucGUGCUUGA--GCCGCACUu-----UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 195220 0.73 0.779923
Target:  5'- cGGCGCuGAugUCGGUGcUGGuuGuAGGCCa -3'
miRNA:   3'- -UCGUG-CUugAGCCGC-ACUuuC-UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 119794 0.73 0.81529
Target:  5'- cGGCgACGAGgUCGGCGccgccGAGGAGGUCu -3'
miRNA:   3'- -UCG-UGCUUgAGCCGCac---UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 121461 0.73 0.788978
Target:  5'- --gGCGGACaucccCGGCGUGuccauGGAGGCCg -3'
miRNA:   3'- ucgUGCUUGa----GCCGCACuu---UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 155386 0.74 0.761437
Target:  5'- cGGCGCGGACgacgaggcCGGCGggGGGcugggcaccGGAGGCCu -3'
miRNA:   3'- -UCGUGCUUGa-------GCCGCa-CUU---------UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 97522 0.78 0.543748
Target:  5'- cGCA-GAGCUCGGgGUGGucGAGGCg -3'
miRNA:   3'- uCGUgCUUGAGCCgCACUuuCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 53253 0.73 0.797897
Target:  5'- aAGCccccGCGGACUUGGCGaaaaagaccUGAAGGAggacgGGCCg -3'
miRNA:   3'- -UCG----UGCUUGAGCCGC---------ACUUUCU-----CCGG- -5'
14631 3' -53.6 NC_003521.1 + 127777 0.77 0.56346
Target:  5'- uGCugGAGCaCGGCGcguuugUGAAAGAGGCg -3'
miRNA:   3'- uCGugCUUGaGCCGC------ACUUUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 129289 0.74 0.758624
Target:  5'- aGGCGCcggcgguacuuuuuGAGCggCGGCG-GGAAGAGGUCg -3'
miRNA:   3'- -UCGUG--------------CUUGa-GCCGCaCUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 87978 0.73 0.797897
Target:  5'- cGGCGCGAggACUCGGUGaaucuGGGGGCg -3'
miRNA:   3'- -UCGUGCU--UGAGCCGCacuu-UCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 106821 0.73 0.81529
Target:  5'- -cCGCGAACUCGGagaUGAGAGccuuGGCCg -3'
miRNA:   3'- ucGUGCUUGAGCCgc-ACUUUCu---CCGG- -5'
14631 3' -53.6 NC_003521.1 + 87753 0.77 0.573388
Target:  5'- cGGCcCGGGCccCGGCGgcGGAGGAGGCCu -3'
miRNA:   3'- -UCGuGCUUGa-GCCGCa-CUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 213385 0.76 0.653705
Target:  5'- cGGC-CGAAUUCGGCcUGGGcugccuGGAGGCCu -3'
miRNA:   3'- -UCGuGCUUGAGCCGcACUU------UCUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.