miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 3' -53.6 NC_003521.1 + 160502 0.66 0.986216
Target:  5'- cAGCA--GACcgCGGCGggaGGAGGGGGCg -3'
miRNA:   3'- -UCGUgcUUGa-GCCGCa--CUUUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 213120 0.66 0.986216
Target:  5'- cGCugGGugU-GGCGUGGu-GcGGCCg -3'
miRNA:   3'- uCGugCUugAgCCGCACUuuCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 218788 0.66 0.986377
Target:  5'- gGGCGCGGAaaacaguccgucuuaUCGGCGUc--GGGGuGCCg -3'
miRNA:   3'- -UCGUGCUUg--------------AGCCGCAcuuUCUC-CGG- -5'
14631 3' -53.6 NC_003521.1 + 36885 0.66 0.984347
Target:  5'- gAGCGaGGGCgucaGGCagccgugGUGGAAGAGGCUu -3'
miRNA:   3'- -UCGUgCUUGag--CCG-------CACUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 130759 0.66 0.987761
Target:  5'- gGGCGCGAGCgccgcgcCGGgGgagcagaaagGGAAGAagacGGCCa -3'
miRNA:   3'- -UCGUGCUUGa------GCCgCa---------CUUUCU----CCGG- -5'
14631 3' -53.6 NC_003521.1 + 238457 0.66 0.984525
Target:  5'- cAGgGCGGcCUCGGCGggcgGGgcgGAGAcgcGGCCc -3'
miRNA:   3'- -UCgUGCUuGAGCCGCa---CU---UUCU---CCGG- -5'
14631 3' -53.6 NC_003521.1 + 128627 0.66 0.991604
Target:  5'- gAGCACGAAgUUGcCGU--AGGuGGCCg -3'
miRNA:   3'- -UCGUGCUUgAGCcGCAcuUUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 224016 0.66 0.984525
Target:  5'- cAGCgGCGGGCcCGGCGgucgGGgcGGGcGCCg -3'
miRNA:   3'- -UCG-UGCUUGaGCCGCa---CUuuCUC-CGG- -5'
14631 3' -53.6 NC_003521.1 + 62972 0.66 0.987613
Target:  5'- cGGCGCaagGAACcCGGCGaGAGuaaacauGGAGGCa -3'
miRNA:   3'- -UCGUG---CUUGaGCCGCaCUU-------UCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 127822 0.66 0.987761
Target:  5'- aGGCGCGcAGCUCG---UGGAAG-GGCCc -3'
miRNA:   3'- -UCGUGC-UUGAGCcgcACUUUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 55425 0.66 0.987312
Target:  5'- cGCACGAGaccuccacgucguuCUggaucugggCGGCGcgcUGGAAGAGGCa -3'
miRNA:   3'- uCGUGCUU--------------GA---------GCCGC---ACUUUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 193123 0.66 0.984525
Target:  5'- cGUGCGAAgUCGGaaGUGcagaGGGGAGGCUc -3'
miRNA:   3'- uCGUGCUUgAGCCg-CAC----UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 54755 0.66 0.990325
Target:  5'- uGCACguaGAACUUGGUGagguccuUGcuGGAGGUCa -3'
miRNA:   3'- uCGUG---CUUGAGCCGC-------ACuuUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 88036 0.66 0.990447
Target:  5'- cAGCuuGAGCUCGuugagcGCGcGGAuGAGGUCg -3'
miRNA:   3'- -UCGugCUUGAGC------CGCaCUUuCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 138910 0.66 0.986216
Target:  5'- gAGUACGccGGCUCGGUGUcGGAccacGGcGGCUg -3'
miRNA:   3'- -UCGUGC--UUGAGCCGCA-CUU----UCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 126436 0.66 0.989951
Target:  5'- cAGCACcAGCgacacCGGCGaGAucuuguacagcauGGAGGCCa -3'
miRNA:   3'- -UCGUGcUUGa----GCCGCaCUu------------UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 109343 0.66 0.984525
Target:  5'- cGGCAgcAGC-CGGCGc--AGGAGGCCg -3'
miRNA:   3'- -UCGUgcUUGaGCCGCacuUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 218423 0.66 0.991604
Target:  5'- cAGCAUGGccaGCgacagCGGCGgcaccacGGAGGAcauGGCCg -3'
miRNA:   3'- -UCGUGCU---UGa----GCCGCa------CUUUCU---CCGG- -5'
14631 3' -53.6 NC_003521.1 + 187894 0.66 0.989169
Target:  5'- cGGCACGGg--CGGCG-GggGcAGGUCg -3'
miRNA:   3'- -UCGUGCUugaGCCGCaCuuUcUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 16506 0.66 0.984525
Target:  5'- gAGCACGGGCUgCGGCGcucggcucgGcuGGAGcGCa -3'
miRNA:   3'- -UCGUGCUUGA-GCCGCa--------CuuUCUC-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.