Results 21 - 40 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14631 | 3' | -53.6 | NC_003521.1 | + | 96651 | 0.66 | 0.987761 |
Target: 5'- cGCGCGGcaggcggcGC-CGGCGUGcuuGAAGAGcaacGCCu -3' miRNA: 3'- uCGUGCU--------UGaGCCGCAC---UUUCUC----CGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 38229 | 0.66 | 0.984525 |
Target: 5'- cAGgGCGGcCUCGGCGggcgGGgcgGAGAcgcGGCCc -3' miRNA: 3'- -UCgUGCUuGAGCCGCa---CU---UUCU---CCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 62972 | 0.66 | 0.987613 |
Target: 5'- cGGCGCaagGAACcCGGCGaGAGuaaacauGGAGGCa -3' miRNA: 3'- -UCGUG---CUUGaGCCGCaCUU-------UCUCCGg -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 160502 | 0.66 | 0.986216 |
Target: 5'- cAGCA--GACcgCGGCGggaGGAGGGGGCg -3' miRNA: 3'- -UCGUgcUUGa-GCCGCa--CUUUCUCCGg -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 138910 | 0.66 | 0.986216 |
Target: 5'- gAGUACGccGGCUCGGUGUcGGAccacGGcGGCUg -3' miRNA: 3'- -UCGUGC--UUGAGCCGCA-CUU----UCuCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 16506 | 0.66 | 0.984525 |
Target: 5'- gAGCACGGGCUgCGGCGcucggcucgGcuGGAGcGCa -3' miRNA: 3'- -UCGUGCUUGA-GCCGCa--------CuuUCUC-CGg -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 127822 | 0.66 | 0.987761 |
Target: 5'- aGGCGCGcAGCUCG---UGGAAG-GGCCc -3' miRNA: 3'- -UCGUGC-UUGAGCcgcACUUUCuCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 165032 | 0.66 | 0.986216 |
Target: 5'- cAGCAUGGugcuGCcgCGGCGUcugcaccuGGAGGcGGCCu -3' miRNA: 3'- -UCGUGCU----UGa-GCCGCA--------CUUUCuCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 238457 | 0.66 | 0.984525 |
Target: 5'- cAGgGCGGcCUCGGCGggcgGGgcgGAGAcgcGGCCc -3' miRNA: 3'- -UCgUGCUuGAGCCGCa---CU---UUCU---CCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 213120 | 0.66 | 0.986216 |
Target: 5'- cGCugGGugU-GGCGUGGu-GcGGCCg -3' miRNA: 3'- uCGugCUugAgCCGCACUuuCuCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 155106 | 0.66 | 0.986216 |
Target: 5'- uGCAgGAGCagGGCGUGGAGGAc--- -3' miRNA: 3'- uCGUgCUUGagCCGCACUUUCUccgg -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 55425 | 0.66 | 0.987312 |
Target: 5'- cGCACGAGaccuccacgucguuCUggaucugggCGGCGcgcUGGAAGAGGCa -3' miRNA: 3'- uCGUGCUU--------------GA---------GCCGC---ACUUUCUCCGg -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 197353 | 0.66 | 0.990325 |
Target: 5'- cAGCACGGccgccgcGCU-GGCccgcuGUGAGAGuuccaGGGCCg -3' miRNA: 3'- -UCGUGCU-------UGAgCCG-----CACUUUC-----UCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 122700 | 0.66 | 0.987761 |
Target: 5'- uGgGCGu-CUCGGCGggGcuGGAGGCg -3' miRNA: 3'- uCgUGCuuGAGCCGCa-CuuUCUCCGg -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 126436 | 0.66 | 0.989951 |
Target: 5'- cAGCACcAGCgacacCGGCGaGAucuuguacagcauGGAGGCCa -3' miRNA: 3'- -UCGUGcUUGa----GCCGCaCUu------------UCUCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 128627 | 0.66 | 0.991604 |
Target: 5'- gAGCACGAAgUUGcCGU--AGGuGGCCg -3' miRNA: 3'- -UCGUGCUUgAGCcGCAcuUUCuCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 224016 | 0.66 | 0.984525 |
Target: 5'- cAGCgGCGGGCcCGGCGgucgGGgcGGGcGCCg -3' miRNA: 3'- -UCG-UGCUUGaGCCGCa---CUuuCUC-CGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 218788 | 0.66 | 0.986377 |
Target: 5'- gGGCGCGGAaaacaguccgucuuaUCGGCGUc--GGGGuGCCg -3' miRNA: 3'- -UCGUGCUUg--------------AGCCGCAcuuUCUC-CGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 130759 | 0.66 | 0.987761 |
Target: 5'- gGGCGCGAGCgccgcgcCGGgGgagcagaaagGGAAGAagacGGCCa -3' miRNA: 3'- -UCGUGCUUGa------GCCgCa---------CUUUCU----CCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 187894 | 0.66 | 0.989169 |
Target: 5'- cGGCACGGg--CGGCG-GggGcAGGUCg -3' miRNA: 3'- -UCGUGCUugaGCCGCaCuuUcUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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