miRNA display CGI


Results 21 - 40 of 215 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 3' -53.6 NC_003521.1 + 216106 0.74 0.742507
Target:  5'- gAGCAUGAACUgguugagcgCGGCGc---GGAGGCCg -3'
miRNA:   3'- -UCGUGCUUGA---------GCCGCacuuUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 129289 0.74 0.758624
Target:  5'- aGGCGCcggcgguacuuuuuGAGCggCGGCG-GGAAGAGGUCg -3'
miRNA:   3'- -UCGUG--------------CUUGa-GCCGCaCUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 155386 0.74 0.761437
Target:  5'- cGGCGCGGACgacgaggcCGGCGggGGGcugggcaccGGAGGCCu -3'
miRNA:   3'- -UCGUGCUUGa-------GCCGCa-CUU---------UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 136594 0.74 0.761437
Target:  5'- uGCuCGAucACUCGGCacucucGUGcGAGGAGGCCg -3'
miRNA:   3'- uCGuGCU--UGAGCCG------CAC-UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 83703 0.74 0.77074
Target:  5'- cGCGCGAGCg-GGCGUccAAGGGGUCc -3'
miRNA:   3'- uCGUGCUUGagCCGCAcuUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 54137 0.74 0.77074
Target:  5'- uGCAUGcuGCUaccgcCGGCGUuGGAGAGGCCg -3'
miRNA:   3'- uCGUGCu-UGA-----GCCGCAcUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 195220 0.73 0.779923
Target:  5'- cGGCGCuGAugUCGGUGcUGGuuGuAGGCCa -3'
miRNA:   3'- -UCGUG-CUugAGCCGC-ACUuuC-UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 127319 0.73 0.788079
Target:  5'- cGCACGcuCUCGGUGacggccaUGAGGGccAGGCCg -3'
miRNA:   3'- uCGUGCuuGAGCCGC-------ACUUUC--UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 58987 0.73 0.788978
Target:  5'- aGGCACugguGgUCGGCGUGguAGAGGUa -3'
miRNA:   3'- -UCGUGcu--UgAGCCGCACuuUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 121461 0.73 0.788978
Target:  5'- --gGCGGACaucccCGGCGUGuccauGGAGGCCg -3'
miRNA:   3'- ucgUGCUUGa----GCCGCACuu---UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 53253 0.73 0.797897
Target:  5'- aAGCccccGCGGACUUGGCGaaaaagaccUGAAGGAggacgGGCCg -3'
miRNA:   3'- -UCG----UGCUUGAGCCGC---------ACUUUCU-----CCGG- -5'
14631 3' -53.6 NC_003521.1 + 87978 0.73 0.797897
Target:  5'- cGGCGCGAggACUCGGUGaaucuGGGGGCg -3'
miRNA:   3'- -UCGUGCU--UGAGCCGCacuu-UCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 27448 0.73 0.80667
Target:  5'- aGGC-CGAAUUCGGcCGUGAGcgccAGGcuGGCCa -3'
miRNA:   3'- -UCGuGCUUGAGCC-GCACUU----UCU--CCGG- -5'
14631 3' -53.6 NC_003521.1 + 147470 0.73 0.80667
Target:  5'- uGGCGCGAca--GGcCGUGAAGGuGGCCc -3'
miRNA:   3'- -UCGUGCUugagCC-GCACUUUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 198726 0.73 0.81529
Target:  5'- cGCGCGGGCUUGGUGccAGAcGAGGUCu -3'
miRNA:   3'- uCGUGCUUGAGCCGCacUUU-CUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 119794 0.73 0.81529
Target:  5'- cGGCgACGAGgUCGGCGccgccGAGGAGGUCu -3'
miRNA:   3'- -UCG-UGCUUgAGCCGCac---UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 106821 0.73 0.81529
Target:  5'- -cCGCGAACUCGGagaUGAGAGccuuGGCCg -3'
miRNA:   3'- ucGUGCUUGAGCCgc-ACUUUCu---CCGG- -5'
14631 3' -53.6 NC_003521.1 + 239446 0.72 0.823749
Target:  5'- cAGCGCGGGCUCGGgGacagcGGuGGCCc -3'
miRNA:   3'- -UCGUGCUUGAGCCgCacuu-UCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 13895 0.72 0.823749
Target:  5'- cGCcgGgGGGCcCGGCGcGGAGGGGGCCg -3'
miRNA:   3'- uCG--UgCUUGaGCCGCaCUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 39218 0.72 0.823749
Target:  5'- cAGCGCGGGCUCGGgGacagcGGuGGCCc -3'
miRNA:   3'- -UCGUGCUUGAGCCgCacuu-UCuCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.