miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 3' -53.6 NC_003521.1 + 166940 0.72 0.832039
Target:  5'- cGGCcuuGCGGAuCUCgGGCG-GggGGAGGCUc -3'
miRNA:   3'- -UCG---UGCUU-GAG-CCGCaCuuUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 184752 0.72 0.832039
Target:  5'- uGCGCGAGCU-GGUGac--GGAGGCCg -3'
miRNA:   3'- uCGUGCUUGAgCCGCacuuUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 36584 0.72 0.840153
Target:  5'- uGCGCGAACUggccUGGCG-GcgGGuGGCCg -3'
miRNA:   3'- uCGUGCUUGA----GCCGCaCuuUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 110302 0.72 0.840153
Target:  5'- cAGCACGAAgUUGucGCGcUGGuAGGGGGCCu -3'
miRNA:   3'- -UCGUGCUUgAGC--CGC-ACU-UUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 123681 0.72 0.848084
Target:  5'- cGGCGCGcug-CGGCGUGGcgguggaagAGGAGGCg -3'
miRNA:   3'- -UCGUGCuugaGCCGCACU---------UUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 216295 0.72 0.852753
Target:  5'- gAGCggACGAcgUUGGCGggggugaugucggGAAAGAGGCCg -3'
miRNA:   3'- -UCG--UGCUugAGCCGCa------------CUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 157595 0.72 0.855826
Target:  5'- cGCGCGAGu---GCGUGcgGGAGGCCg -3'
miRNA:   3'- uCGUGCUUgagcCGCACuuUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 126750 0.72 0.863371
Target:  5'- cAGCACGAACUgcagCGaCGUGAAguccGGcAGGCCc -3'
miRNA:   3'- -UCGUGCUUGA----GCcGCACUU----UC-UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 166417 0.72 0.863371
Target:  5'- gAGCGCGAugUagagccagaccCGGCGUGgcAGcGGGCUu -3'
miRNA:   3'- -UCGUGCUugA-----------GCCGCACuuUC-UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 135788 0.72 0.863371
Target:  5'- uGGCGCugcgggaggagGAGCagCGGCG-GAGGGAGGCg -3'
miRNA:   3'- -UCGUG-----------CUUGa-GCCGCaCUUUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 98218 0.72 0.866333
Target:  5'- --gGCGGGCagCGGCGUGGGAGGcggggaggcgggggcGGCCa -3'
miRNA:   3'- ucgUGCUUGa-GCCGCACUUUCU---------------CCGG- -5'
14631 3' -53.6 NC_003521.1 + 31672 0.71 0.870715
Target:  5'- aGGCGC-AGCUCGGCGUucuccagguGAAAGugGGGCg -3'
miRNA:   3'- -UCGUGcUUGAGCCGCA---------CUUUC--UCCGg -5'
14631 3' -53.6 NC_003521.1 + 86061 0.71 0.870715
Target:  5'- -cCACGAugUCGGCGaUGAccggccAGuAGGCCa -3'
miRNA:   3'- ucGUGCUugAGCCGC-ACUu-----UC-UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 205180 0.71 0.877851
Target:  5'- uAGCugGugauCUCGGUaUGAGgguccGGAGGCCc -3'
miRNA:   3'- -UCGugCuu--GAGCCGcACUU-----UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 216239 0.71 0.877851
Target:  5'- aGGCcuACGAGCgggaGGUGgacGAGGAGGCCg -3'
miRNA:   3'- -UCG--UGCUUGag--CCGCac-UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 9478 0.71 0.877851
Target:  5'- uAGCgauccaaaGCGAuCUCGGUGaUGAAgcAGAGGCUg -3'
miRNA:   3'- -UCG--------UGCUuGAGCCGC-ACUU--UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 91930 0.71 0.884093
Target:  5'- cGGCGCuc-CUCGGCGUcggccacGGccGAGGCCa -3'
miRNA:   3'- -UCGUGcuuGAGCCGCA-------CUuuCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 87348 0.71 0.891483
Target:  5'- cGGCcCGAGC-CGGagccCGaGGAGGAGGCCg -3'
miRNA:   3'- -UCGuGCUUGaGCC----GCaCUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 87725 0.71 0.891483
Target:  5'- cGCGCGcGCccggCGGCGUGGu--GGGCCc -3'
miRNA:   3'- uCGUGCuUGa---GCCGCACUuucUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 89883 0.71 0.891483
Target:  5'- uGCACGAugaucugaccgcGCUCGGCccacacgccGUGGAAGGGcGCg -3'
miRNA:   3'- uCGUGCU------------UGAGCCG---------CACUUUCUC-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.