miRNA display CGI


Results 41 - 60 of 215 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 3' -53.6 NC_003521.1 + 96651 0.66 0.987761
Target:  5'- cGCGCGGcaggcggcGC-CGGCGUGcuuGAAGAGcaacGCCu -3'
miRNA:   3'- uCGUGCU--------UGaGCCGCAC---UUUCUC----CGG- -5'
14631 3' -53.6 NC_003521.1 + 197353 0.66 0.990325
Target:  5'- cAGCACGGccgccgcGCU-GGCccgcuGUGAGAGuuccaGGGCCg -3'
miRNA:   3'- -UCGUGCU-------UGAgCCG-----CACUUUC-----UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 211719 0.66 0.991604
Target:  5'- cGCGCGGAUggugCGGC--GAAAGuGcGCCa -3'
miRNA:   3'- uCGUGCUUGa---GCCGcaCUUUCuC-CGG- -5'
14631 3' -53.6 NC_003521.1 + 128396 0.67 0.982488
Target:  5'- gGGCcgccugaGCGGGCgUCGGUccGAAAGGcGGCCg -3'
miRNA:   3'- -UCG-------UGCUUG-AGCCGcaCUUUCU-CCGG- -5'
14631 3' -53.6 NC_003521.1 + 193183 0.67 0.980676
Target:  5'- cGGCGgGAGCggCGgaGCGUGAagaagcgaGAGGGGCa -3'
miRNA:   3'- -UCGUgCUUGa-GC--CGCACU--------UUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 123349 0.67 0.978503
Target:  5'- aGGCcCGucGC-CgGGUGUGGAGGAGGCg -3'
miRNA:   3'- -UCGuGCu-UGaG-CCGCACUUUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 204276 0.67 0.980676
Target:  5'- gAGCACagcaggaagaaGAGCUCGGCGcUGGAcGAuuugGGCg -3'
miRNA:   3'- -UCGUG-----------CUUGAGCCGC-ACUUuCU----CCGg -5'
14631 3' -53.6 NC_003521.1 + 66869 0.67 0.982681
Target:  5'- gGGCACGGugACUgUGGCcgagaccaGUGAcgAGGAGGCa -3'
miRNA:   3'- -UCGUGCU--UGA-GCCG--------CACU--UUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 214522 0.67 0.982681
Target:  5'- aAGCGCGGACa-GcGCGUGGcccuGGCCu -3'
miRNA:   3'- -UCGUGCUUGagC-CGCACUuucuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 97043 0.67 0.980676
Target:  5'- gAGCACGuucaUgGGCGUGAugucgAAGuGGCa -3'
miRNA:   3'- -UCGUGCuug-AgCCGCACU-----UUCuCCGg -5'
14631 3' -53.6 NC_003521.1 + 64935 0.67 0.982681
Target:  5'- cGGUugGAAaaggaaUGGCa-GGAGGAGGCCg -3'
miRNA:   3'- -UCGugCUUga----GCCGcaCUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 39445 0.67 0.980676
Target:  5'- cGGC-CGAGCcCGGCGcc-GAG-GGCCg -3'
miRNA:   3'- -UCGuGCUUGaGCCGCacuUUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 163918 0.67 0.982681
Target:  5'- gGGUGCGGcgGCagCGGCaacGAAAGAGGCg -3'
miRNA:   3'- -UCGUGCU--UGa-GCCGca-CUUUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 136941 0.67 0.980466
Target:  5'- cGCGCGGcaGCccaucccccugUCGGCGcugaucgccagccUGGAcGAGGCCg -3'
miRNA:   3'- uCGUGCU--UG-----------AGCCGC-------------ACUUuCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 137009 0.67 0.976154
Target:  5'- cAGCGCGAGCU-GGCc-----GAGGCCc -3'
miRNA:   3'- -UCGUGCUUGAgCCGcacuuuCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 44363 0.67 0.975164
Target:  5'- cGCugGGGCUgCGGCccacgcccGAGGCCg -3'
miRNA:   3'- uCGugCUUGA-GCCGcacuuu--CUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 203017 0.67 0.980676
Target:  5'- cGCcaagACGggUUCGGCGgugauagccggUGccaaaacagguAAAGAGGCCg -3'
miRNA:   3'- uCG----UGCuuGAGCCGC-----------AC-----------UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 102063 0.67 0.973622
Target:  5'- gAGCacuACGGugUUGGCGgGGAAG-GGCg -3'
miRNA:   3'- -UCG---UGCUugAGCCGCaCUUUCuCCGg -5'
14631 3' -53.6 NC_003521.1 + 210407 0.67 0.978503
Target:  5'- cAGCugGGACcgcagcguggUCGGCGUGGGcggcGAcGGCa -3'
miRNA:   3'- -UCGugCUUG----------AGCCGCACUUu---CU-CCGg -5'
14631 3' -53.6 NC_003521.1 + 110179 0.67 0.982681
Target:  5'- uAGCACagGAGgUUGGgGU---GGAGGCCg -3'
miRNA:   3'- -UCGUG--CUUgAGCCgCAcuuUCUCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.