Results 61 - 80 of 720 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14631 | 5' | -60.3 | NC_003521.1 | + | 114511 | 0.77 | 0.296557 |
Target: 5'- cGUGGCcgccgUGCCCACCGcCGCCacgGGCACCa -3' miRNA: 3'- -CGCUGa----GCGGGUGGU-GCGGg--UCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 134112 | 0.76 | 0.303057 |
Target: 5'- gGUGGC-CGUCCugCGCGCCUAGCugACCc -3' miRNA: 3'- -CGCUGaGCGGGugGUGCGGGUCG--UGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 112988 | 0.74 | 0.397434 |
Target: 5'- aGCGGCgggCGCCacUACCAC-CCgGGCACCu -3' miRNA: 3'- -CGCUGa--GCGG--GUGGUGcGGgUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 191148 | 0.74 | 0.397434 |
Target: 5'- gGCGACagCGCCgCGCU-CGCCCGGCcCCu -3' miRNA: 3'- -CGCUGa-GCGG-GUGGuGCGGGUCGuGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 92925 | 0.74 | 0.408664 |
Target: 5'- aGCGACggCGCCauuuuuccgaucgaaCACCAaaauCCCAGCACCa -3' miRNA: 3'- -CGCUGa-GCGG---------------GUGGUgc--GGGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 39436 | 0.74 | 0.421738 |
Target: 5'- uGCcGCU-GCCgGCCGaGCCCGGCGCCg -3' miRNA: 3'- -CGcUGAgCGGgUGGUgCGGGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 63017 | 0.74 | 0.421738 |
Target: 5'- cCGGCggCGCCCACgACGCCCAcCAgCg -3' miRNA: 3'- cGCUGa-GCGGGUGgUGCGGGUcGUgG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 34851 | 0.74 | 0.430036 |
Target: 5'- gGCGAgUgagagcCGCCCACCACGUagaAGCACUg -3' miRNA: 3'- -CGCUgA------GCGGGUGGUGCGgg-UCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 225489 | 0.74 | 0.430036 |
Target: 5'- cGCGACUgcugcaccagcgCGCUgauCACC-CGCUCGGCGCCg -3' miRNA: 3'- -CGCUGA------------GCGG---GUGGuGCGGGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 40488 | 0.73 | 0.43843 |
Target: 5'- cGCGGCgCG-CCACgGCGCCgCAGCGCa -3' miRNA: 3'- -CGCUGaGCgGGUGgUGCGG-GUCGUGg -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 101687 | 0.74 | 0.389534 |
Target: 5'- gGCGAggggcagauCUUGUCCugUACGCUCAGCACg -3' miRNA: 3'- -CGCU---------GAGCGGGugGUGCGGGUCGUGg -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 196012 | 0.75 | 0.381738 |
Target: 5'- gGCGugUCGCCCuccgGCCAucCGCUCAGCguuugucgGCCu -3' miRNA: 3'- -CGCugAGCGGG----UGGU--GCGGGUCG--------UGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 136663 | 0.76 | 0.316384 |
Target: 5'- uGCGACcCGCgCCGCCGcCGCagAGCACCg -3' miRNA: 3'- -CGCUGaGCG-GGUGGU-GCGggUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 112380 | 0.76 | 0.323211 |
Target: 5'- gGCGuCUCGUCCACCugGCUgGcgcaguGCGCCg -3' miRNA: 3'- -CGCuGAGCGGGUGGugCGGgU------CGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 130357 | 0.76 | 0.337194 |
Target: 5'- uGCGGC-CGCaggCGCCgugcGCGCUCAGCGCCa -3' miRNA: 3'- -CGCUGaGCGg--GUGG----UGCGGGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 152225 | 0.75 | 0.344349 |
Target: 5'- cGUGAa--GUCCAUCACGCgCGGCACCa -3' miRNA: 3'- -CGCUgagCGGGUGGUGCGgGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 194390 | 0.75 | 0.361962 |
Target: 5'- cGCGACucgcuguuauacgcuUCGCCCGucgccgcuuCCugGCCCGcGCGCCc -3' miRNA: 3'- -CGCUG---------------AGCGGGU---------GGugCGGGU-CGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 125869 | 0.75 | 0.366462 |
Target: 5'- gGUGGCcgCGUCCGugucguacggguCCACGCCCAGCAUg -3' miRNA: 3'- -CGCUGa-GCGGGU------------GGUGCGGGUCGUGg -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 121609 | 0.75 | 0.381738 |
Target: 5'- aGCuGGCUgGCgcucaCCACCugGCgCAGCGCCa -3' miRNA: 3'- -CG-CUGAgCG-----GGUGGugCGgGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 141494 | 0.75 | 0.381738 |
Target: 5'- cGCGAggUGCCCACCugGCCCGccucgucccGgACCu -3' miRNA: 3'- -CGCUgaGCGGGUGGugCGGGU---------CgUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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