miRNA display CGI


Results 41 - 60 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 4322 0.79 0.206957
Target:  5'- gGgGGCUCGaCCguCCAUGCCUGGCGCCa -3'
miRNA:   3'- -CgCUGAGC-GGguGGUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 127441 0.79 0.204101
Target:  5'- aGCGGCUCGUCgGCCagcuggccguuguugACGCCCgccAGCGCCg -3'
miRNA:   3'- -CGCUGAGCGGgUGG---------------UGCGGG---UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 137149 0.79 0.201746
Target:  5'- -gGACUCGCCCGCCAUggccgcgGCCgCAGCgGCCg -3'
miRNA:   3'- cgCUGAGCGGGUGGUG-------CGG-GUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 224983 0.82 0.148728
Target:  5'- aGCGG-UCGCCCACCAgcaccacgcacuUGCCCAGCACg -3'
miRNA:   3'- -CGCUgAGCGGGUGGU------------GCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 141841 0.83 0.122549
Target:  5'- uGCGACgCGCCUACgGCuCCCGGCACCg -3'
miRNA:   3'- -CGCUGaGCGGGUGgUGcGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 129233 0.77 0.277709
Target:  5'- cCGGCgcCGCUgGCCACGCgCGGCACCu -3'
miRNA:   3'- cGCUGa-GCGGgUGGUGCGgGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 74178 0.77 0.290166
Target:  5'- cCGACU-GCgCCGCgGCGCCCGGCGCg -3'
miRNA:   3'- cGCUGAgCG-GGUGgUGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 141494 0.75 0.381738
Target:  5'- cGCGAggUGCCCACCugGCCCGccucgucccGgACCu -3'
miRNA:   3'- -CGCUgaGCGGGUGGugCGGGU---------CgUGG- -5'
14631 5' -60.3 NC_003521.1 + 121609 0.75 0.381738
Target:  5'- aGCuGGCUgGCgcucaCCACCugGCgCAGCGCCa -3'
miRNA:   3'- -CG-CUGAgCG-----GGUGGugCGgGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 125869 0.75 0.366462
Target:  5'- gGUGGCcgCGUCCGugucguacggguCCACGCCCAGCAUg -3'
miRNA:   3'- -CGCUGa-GCGGGU------------GGUGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 194390 0.75 0.361962
Target:  5'- cGCGACucgcuguuauacgcuUCGCCCGucgccgcuuCCugGCCCGcGCGCCc -3'
miRNA:   3'- -CGCUG---------------AGCGGGU---------GGugCGGGU-CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 152225 0.75 0.344349
Target:  5'- cGUGAa--GUCCAUCACGCgCGGCACCa -3'
miRNA:   3'- -CGCUgagCGGGUGGUGCGgGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 130357 0.76 0.337194
Target:  5'- uGCGGC-CGCaggCGCCgugcGCGCUCAGCGCCa -3'
miRNA:   3'- -CGCUGaGCGg--GUGG----UGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 112380 0.76 0.323211
Target:  5'- gGCGuCUCGUCCACCugGCUgGcgcaguGCGCCg -3'
miRNA:   3'- -CGCuGAGCGGGUGGugCGGgU------CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 136663 0.76 0.316384
Target:  5'- uGCGACcCGCgCCGCCGcCGCagAGCACCg -3'
miRNA:   3'- -CGCUGaGCG-GGUGGU-GCGggUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 134112 0.76 0.303057
Target:  5'- gGUGGC-CGUCCugCGCGCCUAGCugACCc -3'
miRNA:   3'- -CGCUGaGCGGGugGUGCGGGUCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 114511 0.77 0.296557
Target:  5'- cGUGGCcgccgUGCCCACCGcCGCCacgGGCACCa -3'
miRNA:   3'- -CGCUGa----GCGGGUGGU-GCGGg--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 127252 0.77 0.296557
Target:  5'- aGCGGCUCGUcggcguCCAUgGCGCCCAGgCGCg -3'
miRNA:   3'- -CGCUGAGCG------GGUGgUGCGGGUC-GUGg -5'
14631 5' -60.3 NC_003521.1 + 188136 0.77 0.296557
Target:  5'- aGCGGCUgGCaCCGCCgACGCugCCGGUGCCg -3'
miRNA:   3'- -CGCUGAgCG-GGUGG-UGCG--GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 218877 0.77 0.290166
Target:  5'- cGCG-CUCGCCCACUA-GCuCCAGC-CCg -3'
miRNA:   3'- -CGCuGAGCGGGUGGUgCG-GGUCGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.