miRNA display CGI


Results 41 - 60 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 43653 0.73 0.446917
Target:  5'- cCGcCUCcaGCCCuGCCAgGCCCAGCGCg -3'
miRNA:   3'- cGCuGAG--CGGG-UGGUgCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 27796 0.76 0.337194
Target:  5'- cCGGCcCGCUCgGCCGgcuCGCCCGGCGCCa -3'
miRNA:   3'- cGCUGaGCGGG-UGGU---GCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 91193 0.8 0.193014
Target:  5'- aGCacCUCGCCgGCgGCGUCCAGCGCCg -3'
miRNA:   3'- -CGcuGAGCGGgUGgUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 197318 0.73 0.437586
Target:  5'- gGCGGCaggCGCugacggauguuggCCGCCGCGgCCAGCACg -3'
miRNA:   3'- -CGCUGa--GCG-------------GGUGGUGCgGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 16398 0.8 0.184181
Target:  5'- --cGCUCGCCCACCACGC--AGCGCCu -3'
miRNA:   3'- cgcUGAGCGGGUGGUGCGggUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 113547 0.72 0.527023
Target:  5'- gGCGugUCGgaCgUGCCGCGCCUgGGCGCCa -3'
miRNA:   3'- -CGCugAGC--GgGUGGUGCGGG-UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 60421 0.79 0.213758
Target:  5'- cGCGGC-CGCCagCACCaccagcaguacuccgGCGCCCAGUACCa -3'
miRNA:   3'- -CGCUGaGCGG--GUGG---------------UGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 111659 0.72 0.527023
Target:  5'- aGCGAgaagUCGCCCAUCACcauccccuucgaGCUgAGCGCCg -3'
miRNA:   3'- -CGCUg---AGCGGGUGGUG------------CGGgUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 96547 0.72 0.51783
Target:  5'- aGCGAgUCGCCgUGCU-CGCCCAGCAg- -3'
miRNA:   3'- -CGCUgAGCGG-GUGGuGCGGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 121336 0.72 0.507792
Target:  5'- gGCGACaacggcuUCaCCCugCACGCCCcGCGCg -3'
miRNA:   3'- -CGCUG-------AGcGGGugGUGCGGGuCGUGg -5'
14631 5' -60.3 NC_003521.1 + 171564 0.72 0.49424
Target:  5'- -aGAC-CGCUUGCCACGUcggccaccaucaucaCCAGCACCa -3'
miRNA:   3'- cgCUGaGCGGGUGGUGCG---------------GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 93931 0.73 0.472909
Target:  5'- gGCGACUaccgcUGCCCGCCGuCGUCUGGCuuCCu -3'
miRNA:   3'- -CGCUGA-----GCGGGUGGU-GCGGGUCGu-GG- -5'
14631 5' -60.3 NC_003521.1 + 207623 0.73 0.455493
Target:  5'- gGCGGCUCGCCgGCC-UGCaCCuuCACCu -3'
miRNA:   3'- -CGCUGAGCGGgUGGuGCG-GGucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 25769 0.74 0.405435
Target:  5'- aGCGuccuaaUCGCCUGCCugGCCCugucGCACUu -3'
miRNA:   3'- -CGCug----AGCGGGUGGugCGGGu---CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 126956 0.74 0.389534
Target:  5'- cGUGACggCGCuuacaccaCCGCCACGCucggaagaaaccCCAGCACCa -3'
miRNA:   3'- -CGCUGa-GCG--------GGUGGUGCG------------GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 163067 0.75 0.374048
Target:  5'- cGCGACUacauccUGCCCaACCACuaCCAGaCGCCg -3'
miRNA:   3'- -CGCUGA------GCGGG-UGGUGcgGGUC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 76043 0.75 0.350881
Target:  5'- aCGACccgUGCCCGCCGCgucacuaugguucGCCCGGCgACCg -3'
miRNA:   3'- cGCUGa--GCGGGUGGUG-------------CGGGUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 47506 0.76 0.309666
Target:  5'- gGCGACcacccccaccgUGCCCACCAC-CCCcGCGCCg -3'
miRNA:   3'- -CGCUGa----------GCGGGUGGUGcGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 16795 0.77 0.283883
Target:  5'- gGCGACggCGCCCGCCccgacCGCCgGGCccGCCg -3'
miRNA:   3'- -CGCUGa-GCGGGUGGu----GCGGgUCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 25369 0.78 0.25408
Target:  5'- cGUGGCUC-CCUcgGCCugGCgCCAGCACCc -3'
miRNA:   3'- -CGCUGAGcGGG--UGGugCG-GGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.