miRNA display CGI


Results 41 - 60 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 20288 0.68 0.7165
Target:  5'- uGCGGuggauCUCGCCggCGCCAUGC--AGCACCa -3'
miRNA:   3'- -CGCU-----GAGCGG--GUGGUGCGggUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 20699 0.71 0.592804
Target:  5'- aGCGAacCGCCCGCCAa-CCUGGCGCg -3'
miRNA:   3'- -CGCUgaGCGGGUGGUgcGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 22107 0.66 0.820683
Target:  5'- cGCuuCUCGCCCGCCGcCGCCgCcGUcuccuccGCCu -3'
miRNA:   3'- -CGcuGAGCGGGUGGU-GCGG-GuCG-------UGG- -5'
14631 5' -60.3 NC_003521.1 + 22197 0.7 0.640641
Target:  5'- cGUGGC-CGCuuaCCGCCGCGCgCUGGCgGCCg -3'
miRNA:   3'- -CGCUGaGCG---GGUGGUGCG-GGUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 22370 0.67 0.770941
Target:  5'- aCGGCguggUGCCgGCCAUGUCCuccguGGUGCCg -3'
miRNA:   3'- cGCUGa---GCGGgUGGUGCGGG-----UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 22457 0.7 0.644473
Target:  5'- cGCGGCaCGCCUggcucacgguggccuGCCugGUgaugaacaCCGGCACCa -3'
miRNA:   3'- -CGCUGaGCGGG---------------UGGugCG--------GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 23215 0.66 0.86662
Target:  5'- gGCGGCcgagaCGcCCCugCugGUCCGGgGCg -3'
miRNA:   3'- -CGCUGa----GC-GGGugGugCGGGUCgUGg -5'
14631 5' -60.3 NC_003521.1 + 23282 0.66 0.852259
Target:  5'- aGCGACgUGCaCCGCuuccuggucugCACGCgggucuaCAGCACCg -3'
miRNA:   3'- -CGCUGaGCG-GGUG-----------GUGCGg------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 23910 0.69 0.65978
Target:  5'- uCGAC-CGCCuccgcugcCACCGCGCCCuccuCACCu -3'
miRNA:   3'- cGCUGaGCGG--------GUGGUGCGGGuc--GUGG- -5'
14631 5' -60.3 NC_003521.1 + 24797 0.7 0.650217
Target:  5'- cGCGACUgGCCCu--GgGCCCuGCGCUu -3'
miRNA:   3'- -CGCUGAgCGGGuggUgCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 25369 0.78 0.25408
Target:  5'- cGUGGCUC-CCUcgGCCugGCgCCAGCACCc -3'
miRNA:   3'- -CGCUGAGcGGG--UGGugCG-GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 25417 0.67 0.770941
Target:  5'- -gGGCUCGCCCAgccUCACcuuCCUGGUGCCc -3'
miRNA:   3'- cgCUGAGCGGGU---GGUGc--GGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 25769 0.74 0.405435
Target:  5'- aGCGuccuaaUCGCCUGCCugGCCCugucGCACUu -3'
miRNA:   3'- -CGCug----AGCGGGUGGugCGGGu---CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 25793 0.68 0.744107
Target:  5'- cGCGGCUgcaGCCCACCAUcaGCugCCAGC-Cg -3'
miRNA:   3'- -CGCUGAg--CGGGUGGUG--CG--GGUCGuGg -5'
14631 5' -60.3 NC_003521.1 + 26005 0.77 0.277709
Target:  5'- -gGAacCGCCguCGCCGCGCCCGGCGCCc -3'
miRNA:   3'- cgCUgaGCGG--GUGGUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 26254 0.67 0.788301
Target:  5'- -gGACcccUCGCCC-CUGCuGCUCAGCugCa -3'
miRNA:   3'- cgCUG---AGCGGGuGGUG-CGGGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 26501 0.66 0.85953
Target:  5'- cGCGAUgCGCucuucaCCACCACGCUgcuCACCg -3'
miRNA:   3'- -CGCUGaGCG------GGUGGUGCGGgucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 26904 0.68 0.753148
Target:  5'- -aGACUCuugGUCgCACCGCGCuCCAGaCACg -3'
miRNA:   3'- cgCUGAG---CGG-GUGGUGCG-GGUC-GUGg -5'
14631 5' -60.3 NC_003521.1 + 26937 0.72 0.496037
Target:  5'- cGCGACUCGCCuucuccuCACUcuugggugccauggACGCCCuGCAgCg -3'
miRNA:   3'- -CGCUGAGCGG-------GUGG--------------UGCGGGuCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 27079 0.7 0.611905
Target:  5'- cGUGGC-CG-CCACCACgGCCUucugcGGCGCCg -3'
miRNA:   3'- -CGCUGaGCgGGUGGUG-CGGG-----UCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.