miRNA display CGI


Results 41 - 60 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 27796 0.76 0.337194
Target:  5'- cCGGCcCGCUCgGCCGgcuCGCCCGGCGCCa -3'
miRNA:   3'- cGCUGaGCGGG-UGGU---GCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 130357 0.76 0.337194
Target:  5'- uGCGGC-CGCaggCGCCgugcGCGCUCAGCGCCa -3'
miRNA:   3'- -CGCUGaGCGg--GUGG----UGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 152225 0.75 0.344349
Target:  5'- cGUGAa--GUCCAUCACGCgCGGCACCa -3'
miRNA:   3'- -CGCUgagCGGGUGGUGCGgGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 110572 0.75 0.344349
Target:  5'- aCGuAgUCGUCCACCucacugACGCCCAGCACg -3'
miRNA:   3'- cGC-UgAGCGGGUGG------UGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 76043 0.75 0.350881
Target:  5'- aCGACccgUGCCCGCCGCgucacuaugguucGCCCGGCgACCg -3'
miRNA:   3'- cGCUGa--GCGGGUGGUG-------------CGGGUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 194390 0.75 0.361962
Target:  5'- cGCGACucgcuguuauacgcuUCGCCCGucgccgcuuCCugGCCCGcGCGCCc -3'
miRNA:   3'- -CGCUG---------------AGCGGGU---------GGugCGGGU-CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 125869 0.75 0.366462
Target:  5'- gGUGGCcgCGUCCGugucguacggguCCACGCCCAGCAUg -3'
miRNA:   3'- -CGCUGa-GCGGGU------------GGUGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 27702 0.75 0.366462
Target:  5'- uGCGGC-CGCaccaCGCCACaCCCAGCGCg -3'
miRNA:   3'- -CGCUGaGCGg---GUGGUGcGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 121897 0.75 0.366462
Target:  5'- cGgGACgcCGCCgC-CCACGCCgCGGCGCCg -3'
miRNA:   3'- -CgCUGa-GCGG-GuGGUGCGG-GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 163067 0.75 0.374048
Target:  5'- cGCGACUacauccUGCCCaACCACuaCCAGaCGCCg -3'
miRNA:   3'- -CGCUGA------GCGGG-UGGUGcgGGUC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 173932 0.75 0.378649
Target:  5'- -gGACUCGCCCuugggcgucaccaACugcucggugccgaaCACGUCCAGCACCu -3'
miRNA:   3'- cgCUGAGCGGG-------------UG--------------GUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 134276 0.75 0.381738
Target:  5'- cGCGAC-CgGCCCACuCGCGCUuuCAGCGCUu -3'
miRNA:   3'- -CGCUGaG-CGGGUG-GUGCGG--GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 196012 0.75 0.381738
Target:  5'- gGCGugUCGCCCuccgGCCAucCGCUCAGCguuugucgGCCu -3'
miRNA:   3'- -CGCugAGCGGG----UGGU--GCGGGUCG--------UGG- -5'
14631 5' -60.3 NC_003521.1 + 141494 0.75 0.381738
Target:  5'- cGCGAggUGCCCACCugGCCCGccucgucccGgACCu -3'
miRNA:   3'- -CGCUgaGCGGGUGGugCGGGU---------CgUGG- -5'
14631 5' -60.3 NC_003521.1 + 121609 0.75 0.381738
Target:  5'- aGCuGGCUgGCgcucaCCACCugGCgCAGCGCCa -3'
miRNA:   3'- -CG-CUGAgCG-----GGUGGugCGgGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 181943 0.75 0.381738
Target:  5'- uGCGACUCGCCgCGCCACcucuacguggGCCUuuaccugcugGGCAUCc -3'
miRNA:   3'- -CGCUGAGCGG-GUGGUG----------CGGG----------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 126956 0.74 0.389534
Target:  5'- cGUGACggCGCuuacaccaCCGCCACGCucggaagaaaccCCAGCACCa -3'
miRNA:   3'- -CGCUGa-GCG--------GGUGGUGCG------------GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 101687 0.74 0.389534
Target:  5'- gGCGAggggcagauCUUGUCCugUACGCUCAGCACg -3'
miRNA:   3'- -CGCU---------GAGCGGGugGUGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 191148 0.74 0.397434
Target:  5'- gGCGACagCGCCgCGCU-CGCCCGGCcCCu -3'
miRNA:   3'- -CGCUGa-GCGG-GUGGuGCGGGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 112988 0.74 0.397434
Target:  5'- aGCGGCgggCGCCacUACCAC-CCgGGCACCu -3'
miRNA:   3'- -CGCUGa--GCGG--GUGGUGcGGgUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.