miRNA display CGI


Results 21 - 40 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 165761 0.77 0.275877
Target:  5'- gGCGGCUUGCCCAUCAUcgugccgaaggccaGCCCgcuGGCGCUg -3'
miRNA:   3'- -CGCUGAGCGGGUGGUG--------------CGGG---UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 56911 0.77 0.277709
Target:  5'- cGCGACagCGCCgcagCACCGCcUCCAGCACCu -3'
miRNA:   3'- -CGCUGa-GCGG----GUGGUGcGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 187731 0.77 0.277709
Target:  5'- cGUGACUUGUCUcaucGCCACGUCCAGCgACUg -3'
miRNA:   3'- -CGCUGAGCGGG----UGGUGCGGGUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 129233 0.77 0.277709
Target:  5'- cCGGCgcCGCUgGCCACGCgCGGCACCu -3'
miRNA:   3'- cGCUGa-GCGGgUGGUGCGgGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 26005 0.77 0.277709
Target:  5'- -gGAacCGCCguCGCCGCGCCCGGCGCCc -3'
miRNA:   3'- cgCUgaGCGG--GUGGUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 173248 0.77 0.283883
Target:  5'- gGCGACUCugGCCCGCgGgGCCCGcCGCCu -3'
miRNA:   3'- -CGCUGAG--CGGGUGgUgCGGGUcGUGG- -5'
14631 5' -60.3 NC_003521.1 + 73964 0.77 0.283883
Target:  5'- aCGACcugCGCCCGCCGCGCCac-CGCCu -3'
miRNA:   3'- cGCUGa--GCGGGUGGUGCGGgucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 16795 0.77 0.283883
Target:  5'- gGCGACggCGCCCGCCccgacCGCCgGGCccGCCg -3'
miRNA:   3'- -CGCUGa-GCGGGUGGu----GCGGgUCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 74178 0.77 0.290166
Target:  5'- cCGACU-GCgCCGCgGCGCCCGGCGCg -3'
miRNA:   3'- cGCUGAgCG-GGUGgUGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 115542 0.77 0.290166
Target:  5'- cGCGGCUCGCCUgACggaGCGCCguGCugCg -3'
miRNA:   3'- -CGCUGAGCGGG-UGg--UGCGGguCGugG- -5'
14631 5' -60.3 NC_003521.1 + 218877 0.77 0.290166
Target:  5'- cGCG-CUCGCCCACUA-GCuCCAGC-CCg -3'
miRNA:   3'- -CGCuGAGCGGGUGGUgCG-GGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 188136 0.77 0.296557
Target:  5'- aGCGGCUgGCaCCGCCgACGCugCCGGUGCCg -3'
miRNA:   3'- -CGCUGAgCG-GGUGG-UGCG--GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 127252 0.77 0.296557
Target:  5'- aGCGGCUCGUcggcguCCAUgGCGCCCAGgCGCg -3'
miRNA:   3'- -CGCUGAGCG------GGUGgUGCGGGUC-GUGg -5'
14631 5' -60.3 NC_003521.1 + 114511 0.77 0.296557
Target:  5'- cGUGGCcgccgUGCCCACCGcCGCCacgGGCACCa -3'
miRNA:   3'- -CGCUGa----GCGGGUGGU-GCGGg--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 134112 0.76 0.303057
Target:  5'- gGUGGC-CGUCCugCGCGCCUAGCugACCc -3'
miRNA:   3'- -CGCUGaGCGGGugGUGCGGGUCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 47506 0.76 0.309666
Target:  5'- gGCGACcacccccaccgUGCCCACCAC-CCCcGCGCCg -3'
miRNA:   3'- -CGCUGa----------GCGGGUGGUGcGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 136663 0.76 0.316384
Target:  5'- uGCGACcCGCgCCGCCGcCGCagAGCACCg -3'
miRNA:   3'- -CGCUGaGCG-GGUGGU-GCGggUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 112380 0.76 0.323211
Target:  5'- gGCGuCUCGUCCACCugGCUgGcgcaguGCGCCg -3'
miRNA:   3'- -CGCuGAGCGGGUGGugCGGgU------CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 2359 0.76 0.330148
Target:  5'- cGCGuCUccgcccCGCCCGCCGaggcCGCCCuGCGCCu -3'
miRNA:   3'- -CGCuGA------GCGGGUGGU----GCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 206413 0.76 0.330148
Target:  5'- cGCGACgcccagcugaUC-CUCACCugGCCCgAGCGCCa -3'
miRNA:   3'- -CGCUG----------AGcGGGUGGugCGGG-UCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.