miRNA display CGI


Results 21 - 40 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 162773 0.66 0.86662
Target:  5'- --aACUCGCCCaACUACaaGCUCAaCACCa -3'
miRNA:   3'- cgcUGAGCGGG-UGGUG--CGGGUcGUGG- -5'
14631 5' -60.3 NC_003521.1 + 23215 0.66 0.86662
Target:  5'- gGCGGCcgagaCGcCCCugCugGUCCGGgGCg -3'
miRNA:   3'- -CGCUGa----GC-GGGugGugCGGGUCgUGg -5'
14631 5' -60.3 NC_003521.1 + 105020 0.66 0.86662
Target:  5'- cGCGcCUCcCuCCGCCGCuGCUccuccucccgCAGCGCCa -3'
miRNA:   3'- -CGCuGAGcG-GGUGGUG-CGG----------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 196505 0.66 0.86592
Target:  5'- cGUGucuCUCGUCCcgcagcgGCCAcagcaaccCGCCCAGCucCCg -3'
miRNA:   3'- -CGCu--GAGCGGG-------UGGU--------GCGGGUCGu-GG- -5'
14631 5' -60.3 NC_003521.1 + 106893 0.66 0.865217
Target:  5'- aGCGGCgcaGCgCCACCAggaugaggucguucuCGUCCaaacguugcugcuguAGCACCg -3'
miRNA:   3'- -CGCUGag-CG-GGUGGU---------------GCGGG---------------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 29297 0.66 0.864513
Target:  5'- uGCGugUCGaCCUACgGCGCguauucuuuuauuuUCAGC-CCu -3'
miRNA:   3'- -CGCugAGC-GGGUGgUGCG--------------GGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 185718 0.66 0.862388
Target:  5'- cGCGuCUCGCCgggugcggaggugauCGCCgagcggguGCGCCgGaGCGCCu -3'
miRNA:   3'- -CGCuGAGCGG---------------GUGG--------UGCGGgU-CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 164568 0.66 0.862388
Target:  5'- gGCGGCcgugCGCCUcUCGCGCCuCAcgcucgaggacgugcGCGCCc -3'
miRNA:   3'- -CGCUGa---GCGGGuGGUGCGG-GU---------------CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 140236 0.66 0.862388
Target:  5'- cCGcCUCGUCCACCG-GCCCcuacggcgguaagucGGaCGCCg -3'
miRNA:   3'- cGCuGAGCGGGUGGUgCGGG---------------UC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 37611 0.66 0.862388
Target:  5'- gGCGACUucaagcUGCCCacggauaauuuccucACCACcCCCcGUACCu -3'
miRNA:   3'- -CGCUGA------GCGGG---------------UGGUGcGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 212388 0.66 0.860247
Target:  5'- gGCGACgaagagccacagcagCGguaCCGCCAgGCUCAGCAggcCCa -3'
miRNA:   3'- -CGCUGa--------------GCg--GGUGGUgCGGGUCGU---GG- -5'
14631 5' -60.3 NC_003521.1 + 77945 0.66 0.85953
Target:  5'- aGCGGCcCaCCUGCgCGCGCCCcuGCGCg -3'
miRNA:   3'- -CGCUGaGcGGGUG-GUGCGGGu-CGUGg -5'
14631 5' -60.3 NC_003521.1 + 126045 0.66 0.85953
Target:  5'- uCGugUCGCcgggcuCCACCACGCUacgCAaCACCc -3'
miRNA:   3'- cGCugAGCG------GGUGGUGCGG---GUcGUGG- -5'
14631 5' -60.3 NC_003521.1 + 127011 0.66 0.85953
Target:  5'- cGUGGCggUGCCCgACgACGCCgccgCGGUGCCc -3'
miRNA:   3'- -CGCUGa-GCGGG-UGgUGCGG----GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 176508 0.66 0.85953
Target:  5'- --uGCUCGUgUACCAUGgCCAGCGUCg -3'
miRNA:   3'- cgcUGAGCGgGUGGUGCgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 27215 0.66 0.85953
Target:  5'- gGCGAC-CGCCaccccaacaGCCugGUcaucgCCGGCugCu -3'
miRNA:   3'- -CGCUGaGCGGg--------UGGugCG-----GGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 26501 0.66 0.85953
Target:  5'- cGCGAUgCGCucuucaCCACCACGCUgcuCACCg -3'
miRNA:   3'- -CGCUGaGCG------GGUGGUGCGGgucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 200023 0.66 0.85953
Target:  5'- gGCGAauaGCUgACCGCGCCgGGaguCCg -3'
miRNA:   3'- -CGCUgagCGGgUGGUGCGGgUCgu-GG- -5'
14631 5' -60.3 NC_003521.1 + 117341 0.66 0.85953
Target:  5'- cGCuuucuuCUCGCUCAUCGgGgCCAGuCGCCa -3'
miRNA:   3'- -CGcu----GAGCGGGUGGUgCgGGUC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 149243 0.66 0.85953
Target:  5'- cGCGGCUacuaCGCCUacgacgugGCCAUGUCguuccgcguCGGCGCCc -3'
miRNA:   3'- -CGCUGA----GCGGG--------UGGUGCGG---------GUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.