miRNA display CGI


Results 21 - 40 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 56671 0.66 0.837199
Target:  5'- --cGCUCGCgCACCAggucgcaguagcCGCCCAGgCAgCg -3'
miRNA:   3'- cgcUGAGCGgGUGGU------------GCGGGUC-GUgG- -5'
14631 5' -60.3 NC_003521.1 + 142402 0.66 0.837199
Target:  5'- cGCGGCccuggcCGCCCuggccaacgucACCACcaGCgUCGGCACCa -3'
miRNA:   3'- -CGCUGa-----GCGGG-----------UGGUG--CG-GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 118056 0.66 0.837199
Target:  5'- uGCu-CUCGgCCGCCAuccccgUGCCCGGUgucaGCCa -3'
miRNA:   3'- -CGcuGAGCgGGUGGU------GCGGGUCG----UGG- -5'
14631 5' -60.3 NC_003521.1 + 111839 0.66 0.821485
Target:  5'- aGCGuggUGCCCAgCAuCGUcuuuuuCCAGCGCCa -3'
miRNA:   3'- -CGCugaGCGGGUgGU-GCG------GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 54195 0.66 0.837199
Target:  5'- uCGACUUGCcgCCACCAcCGCCgc-CGCCg -3'
miRNA:   3'- cGCUGAGCG--GGUGGU-GCGGgucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 222230 0.66 0.842547
Target:  5'- cGCGGCUgGgCCGCaggaaccagucgagCGCGCucuCCAGCugCg -3'
miRNA:   3'- -CGCUGAgCgGGUG--------------GUGCG---GGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 113977 0.66 0.844814
Target:  5'- gGCaGGCg-GCCgGCCGgGCaCCGGCugCa -3'
miRNA:   3'- -CG-CUGagCGGgUGGUgCG-GGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 143269 0.66 0.82942
Target:  5'- cGCGGCcugaccugCGaCCCGCgCAUGUUCgAGCGCCu -3'
miRNA:   3'- -CGCUGa-------GC-GGGUG-GUGCGGG-UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 209523 0.66 0.82942
Target:  5'- gGUGACcgUCGCCgCugCcgcgguuauGCGCCCGGCGg- -3'
miRNA:   3'- -CGCUG--AGCGG-GugG---------UGCGGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 112940 0.66 0.837199
Target:  5'- --uACUaCGCCUACCGCGaCCCGcccgagauGCGCUa -3'
miRNA:   3'- cgcUGA-GCGGGUGGUGC-GGGU--------CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 217460 0.66 0.82942
Target:  5'- uGCGGgaagGCCagCACCAUGCCCAGaCACa -3'
miRNA:   3'- -CGCUgag-CGG--GUGGUGCGGGUC-GUGg -5'
14631 5' -60.3 NC_003521.1 + 218401 0.66 0.84406
Target:  5'- gGCGguACUCgGCCaCGCCGCGCagcauggCCAGCGa- -3'
miRNA:   3'- -CGC--UGAG-CGG-GUGGUGCG-------GGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 100259 0.66 0.837199
Target:  5'- aCGACgagcugUCGCC-GCCGcCGCCgCAGCAgCCa -3'
miRNA:   3'- cGCUG------AGCGGgUGGU-GCGG-GUCGU-GG- -5'
14631 5' -60.3 NC_003521.1 + 18984 0.66 0.82942
Target:  5'- gGUGGa-CGCCCACaGCGgCCAGCugUu -3'
miRNA:   3'- -CGCUgaGCGGGUGgUGCgGGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 55201 0.66 0.821485
Target:  5'- gGCGAUggcaGUCCGCCGCGCUCcgucGGCGu- -3'
miRNA:   3'- -CGCUGag--CGGGUGGUGCGGG----UCGUgg -5'
14631 5' -60.3 NC_003521.1 + 239890 0.66 0.837199
Target:  5'- aUGGCUCGgCUggugguguuaGCCaugaACGCCguGCGCCa -3'
miRNA:   3'- cGCUGAGCgGG----------UGG----UGCGGguCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 116644 0.66 0.821485
Target:  5'- aGCGGCagcuaCGCCgGCCucuCGCucuCCAGcCGCCg -3'
miRNA:   3'- -CGCUGa----GCGGgUGGu--GCG---GGUC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 200067 0.66 0.837199
Target:  5'- gGCuGGCUuacCGCCgGCUugGCCucgcCAGCACa -3'
miRNA:   3'- -CG-CUGA---GCGGgUGGugCGG----GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 120926 0.66 0.844814
Target:  5'- uGCGGCU-GCCCGCgGCGgcggcUCCGGCGa- -3'
miRNA:   3'- -CGCUGAgCGGGUGgUGC-----GGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 137209 0.66 0.824677
Target:  5'- gGCGGCcgggaCGCCCuucuuucagaucccCCGCGCaCCGGCcgggGCCg -3'
miRNA:   3'- -CGCUGa----GCGGGu-------------GGUGCG-GGUCG----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.