miRNA display CGI


Results 41 - 60 of 720 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 79 0.66 0.850044
Target:  5'- cGCGugUCGCUUGCCGCgggcgugcagggagGCCgaagCGGCgGCCg -3'
miRNA:   3'- -CGCugAGCGGGUGGUG--------------CGG----GUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 153995 0.66 0.852259
Target:  5'- aGCuGCUUGCgCAgCACGCacgggucgcgCAGCACCu -3'
miRNA:   3'- -CGcUGAGCGgGUgGUGCGg---------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 54195 0.66 0.837199
Target:  5'- uCGACUUGCcgCCACCAcCGCCgc-CGCCg -3'
miRNA:   3'- cGCUGAGCG--GGUGGU-GCGGgucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 200067 0.66 0.837199
Target:  5'- gGCuGGCUuacCGCCgGCUugGCCucgcCAGCACa -3'
miRNA:   3'- -CG-CUGA---GCGGgUGGugCGG----GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 77596 0.66 0.844814
Target:  5'- cGUGGC-CGaaCCCACgucaccgggCGCGCCCgugacGGCGCCg -3'
miRNA:   3'- -CGCUGaGC--GGGUG---------GUGCGGG-----UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 137209 0.66 0.824677
Target:  5'- gGCGGCcgggaCGCCCuucuuucagaucccCCGCGCaCCGGCcgggGCCg -3'
miRNA:   3'- -CGCUGa----GCGGGu-------------GGUGCG-GGUCG----UGG- -5'
14631 5' -60.3 NC_003521.1 + 99952 0.66 0.837199
Target:  5'- aGCGuCUCGUCgAUgAUGgCCAGCAgCg -3'
miRNA:   3'- -CGCuGAGCGGgUGgUGCgGGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 60711 0.66 0.852259
Target:  5'- gGCGGCgcggGUCgCACCACGCCgCuGC-CCu -3'
miRNA:   3'- -CGCUGag--CGG-GUGGUGCGG-GuCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 184840 0.66 0.844814
Target:  5'- cGCuACUCGCgCCGCUGCGacugccgacCCCAGgCACa -3'
miRNA:   3'- -CGcUGAGCG-GGUGGUGC---------GGGUC-GUGg -5'
14631 5' -60.3 NC_003521.1 + 126831 0.66 0.82942
Target:  5'- cGCGuGCUCGCCCACgAa---CuGCACCg -3'
miRNA:   3'- -CGC-UGAGCGGGUGgUgcggGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 239854 0.66 0.820683
Target:  5'- aGCaGAC-CGCCgGCCucucguuGCGCCCAcuuGCGCa -3'
miRNA:   3'- -CG-CUGaGCGGgUGG-------UGCGGGU---CGUGg -5'
14631 5' -60.3 NC_003521.1 + 149767 0.66 0.852259
Target:  5'- gGCGGC-CGCgCGgUACGCCuCAaCGCCa -3'
miRNA:   3'- -CGCUGaGCGgGUgGUGCGG-GUcGUGG- -5'
14631 5' -60.3 NC_003521.1 + 103931 0.66 0.852259
Target:  5'- aCGuCgUUGUCgACCGCGaacaCCGGCGCCa -3'
miRNA:   3'- cGCuG-AGCGGgUGGUGCg---GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 105020 0.66 0.86662
Target:  5'- cGCGcCUCcCuCCGCCGCuGCUccuccucccgCAGCGCCa -3'
miRNA:   3'- -CGCuGAGcG-GGUGGUG-CGG----------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 123666 0.66 0.821485
Target:  5'- aGCGACagGCgCACgAUGgCCAucuGCGCCa -3'
miRNA:   3'- -CGCUGagCGgGUGgUGCgGGU---CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 217460 0.66 0.82942
Target:  5'- uGCGGgaagGCCagCACCAUGCCCAGaCACa -3'
miRNA:   3'- -CGCUgag-CGG--GUGGUGCGGGUC-GUGg -5'
14631 5' -60.3 NC_003521.1 + 239890 0.66 0.837199
Target:  5'- aUGGCUCGgCUggugguguuaGCCaugaACGCCguGCGCCa -3'
miRNA:   3'- cGCUGAGCgGG----------UGG----UGCGGguCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 118056 0.66 0.837199
Target:  5'- uGCu-CUCGgCCGCCAuccccgUGCCCGGUgucaGCCa -3'
miRNA:   3'- -CGcuGAGCgGGUGGU------GCGGGUCG----UGG- -5'
14631 5' -60.3 NC_003521.1 + 100259 0.66 0.837199
Target:  5'- aCGACgagcugUCGCC-GCCGcCGCCgCAGCAgCCa -3'
miRNA:   3'- cGCUG------AGCGGgUGGU-GCGG-GUCGU-GG- -5'
14631 5' -60.3 NC_003521.1 + 116644 0.66 0.821485
Target:  5'- aGCGGCagcuaCGCCgGCCucuCGCucuCCAGcCGCCg -3'
miRNA:   3'- -CGCUGa----GCGGgUGGu--GCG---GGUC-GUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.