miRNA display CGI


Results 21 - 40 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 14651 0.68 0.743199
Target:  5'- uGCGuCUgGCCCuucugcgcgcugaACgACGCCgAGUGCCg -3'
miRNA:   3'- -CGCuGAgCGGG-------------UGgUGCGGgUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 14746 0.71 0.545586
Target:  5'- cGUGACggGCCgGCCGCGgCCGgggcGCGCCu -3'
miRNA:   3'- -CGCUGagCGGgUGGUGCgGGU----CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 14940 0.68 0.750446
Target:  5'- aGCGGCagCGCCagacgcgcauggagCACCGCaccuguGCCC-GCACCa -3'
miRNA:   3'- -CGCUGa-GCGG--------------GUGGUG------CGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 15682 0.66 0.851522
Target:  5'- cGCGACUggguccgcaaccaCGUCgACCAggugcuguCGCUCGGCAUCc -3'
miRNA:   3'- -CGCUGA-------------GCGGgUGGU--------GCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 16090 0.66 0.837199
Target:  5'- cGCuGGC-CGCCUGCguCGgCgAGCACCa -3'
miRNA:   3'- -CG-CUGaGCGGGUGguGCgGgUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 16120 0.67 0.813398
Target:  5'- gGCGGgaCGUgaacuuCCA-CACGCCCGgGCGCCa -3'
miRNA:   3'- -CGCUgaGCG------GGUgGUGCGGGU-CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 16214 0.7 0.611905
Target:  5'- gGUGGCggCGCCCugccGCCugGCCgAGUGCg -3'
miRNA:   3'- -CGCUGa-GCGGG----UGGugCGGgUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 16290 0.67 0.770941
Target:  5'- gGCGcCgugggUGCCUACCG-GCCCGGCGgCu -3'
miRNA:   3'- -CGCuGa----GCGGGUGGUgCGGGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 16398 0.8 0.184181
Target:  5'- --cGCUCGCCCACCACGC--AGCGCCu -3'
miRNA:   3'- cgcUGAGCGGGUGGUGCGggUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 16737 0.67 0.805168
Target:  5'- gGCGAC-CGCCgGCgCGCGCgCC--CGCCg -3'
miRNA:   3'- -CGCUGaGCGGgUG-GUGCG-GGucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 16795 0.77 0.283883
Target:  5'- gGCGACggCGCCCGCCccgacCGCCgGGCccGCCg -3'
miRNA:   3'- -CGCUGa-GCGGGUGGu----GCGGgUCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 16887 0.69 0.65978
Target:  5'- cGCGGC-CGCCUcgacccccucgGCCGCGCCUccaauCACCg -3'
miRNA:   3'- -CGCUGaGCGGG-----------UGGUGCGGGuc---GUGG- -5'
14631 5' -60.3 NC_003521.1 + 17147 0.67 0.770941
Target:  5'- cGCGcUUCGCCCGacccucCCugGCCaaCGGgGCCg -3'
miRNA:   3'- -CGCuGAGCGGGU------GGugCGG--GUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 17303 0.68 0.744107
Target:  5'- cGCGACggagaCAUCAUcCCCAGCACCg -3'
miRNA:   3'- -CGCUGagcggGUGGUGcGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 17457 0.67 0.779679
Target:  5'- cGCGAUgUCGCugcugaccaaggCCGCCGCcgagGCCUggGGCACCu -3'
miRNA:   3'- -CGCUG-AGCG------------GGUGGUG----CGGG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 17633 0.68 0.734981
Target:  5'- cCGACgCGCUgcggaGCUACGUacgCCAGCACCg -3'
miRNA:   3'- cGCUGaGCGGg----UGGUGCG---GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 18269 0.67 0.770941
Target:  5'- gGgGACcUGCCCGCgACgggaggGCCC-GCACCg -3'
miRNA:   3'- -CgCUGaGCGGGUGgUG------CGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 18907 0.72 0.536276
Target:  5'- cGCGGCa-GCCCcgaaggguggcGCCGCGCgCCGGCAauCCg -3'
miRNA:   3'- -CGCUGagCGGG-----------UGGUGCG-GGUCGU--GG- -5'
14631 5' -60.3 NC_003521.1 + 18984 0.66 0.82942
Target:  5'- gGUGGa-CGCCCACaGCGgCCAGCugUu -3'
miRNA:   3'- -CGCUgaGCGGGUGgUGCgGGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 18998 0.67 0.770941
Target:  5'- cGCGACgagggagacaCGCCCGCCcCGCCgaCGGaGCCc -3'
miRNA:   3'- -CGCUGa---------GCGGGUGGuGCGG--GUCgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.