miRNA display CGI


Results 21 - 40 of 720 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 226962 0.7 0.650217
Target:  5'- gGCGGCgcCGCCCGCagagAC-CCCcGCGCCg -3'
miRNA:   3'- -CGCUGa-GCGGGUGg---UGcGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 226914 0.69 0.669324
Target:  5'- cGCGGcCUCcgcgGCCCccuCCGCGCCgGGCcCCc -3'
miRNA:   3'- -CGCU-GAG----CGGGu--GGUGCGGgUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 226833 0.72 0.508701
Target:  5'- gGgGucCUCGCCCgccGCCGCGCCgGGCAggcCCa -3'
miRNA:   3'- -CgCu-GAGCGGG---UGGUGCGGgUCGU---GG- -5'
14631 5' -60.3 NC_003521.1 + 226433 0.66 0.840265
Target:  5'- cGCGACaCGCCguagcgCGCCAgcuCGUccagguugugggccaCCAGCACCa -3'
miRNA:   3'- -CGCUGaGCGG------GUGGU---GCG---------------GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 226376 0.66 0.86662
Target:  5'- gGCGGCUgaCG-CCGCCGCaggGCCguguGCACCa -3'
miRNA:   3'- -CGCUGA--GCgGGUGGUG---CGGgu--CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 226071 0.72 0.527023
Target:  5'- -aGGCgCGCCCcgGCCGCGgCCGGC-CCg -3'
miRNA:   3'- cgCUGaGCGGG--UGGUGCgGGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 225890 0.67 0.779679
Target:  5'- cGCGuCUgGCgcugCCGCuCGCGCUCgaAGCGCCg -3'
miRNA:   3'- -CGCuGAgCG----GGUG-GUGCGGG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 225764 0.66 0.85953
Target:  5'- uGCaGCaCGCgCCGCuCGCGCUC-GCGCCg -3'
miRNA:   3'- -CGcUGaGCG-GGUG-GUGCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 225588 0.68 0.734981
Target:  5'- gGCG-CUCGgCgGCCucGCGCUCGGcCGCCu -3'
miRNA:   3'- -CGCuGAGCgGgUGG--UGCGGGUC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 225489 0.74 0.430036
Target:  5'- cGCGACUgcugcaccagcgCGCUgauCACC-CGCUCGGCGCCg -3'
miRNA:   3'- -CGCUGA------------GCGG---GUGGuGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 225385 0.67 0.813398
Target:  5'- aGCGACUCuuUauuCCGCGUCCcucGCACCc -3'
miRNA:   3'- -CGCUGAGcgGgu-GGUGCGGGu--CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 225300 0.67 0.796799
Target:  5'- cGCG-UUCGCCacauGCCGcCGCCaacccgAGCGCCg -3'
miRNA:   3'- -CGCuGAGCGGg---UGGU-GCGGg-----UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 225151 0.68 0.725776
Target:  5'- uGCGGacccagUCGCgCACCAC-CUCGGCGCUg -3'
miRNA:   3'- -CGCUg-----AGCGgGUGGUGcGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 224983 0.82 0.148728
Target:  5'- aGCGG-UCGCCCACCAgcaccacgcacuUGCCCAGCACg -3'
miRNA:   3'- -CGCUgAGCGGGUGGU------------GCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 224728 0.67 0.813398
Target:  5'- cGUGguGCUCGCCgACgCagGCGgCCAGCGCg -3'
miRNA:   3'- -CGC--UGAGCGGgUG-G--UGCgGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 224614 0.66 0.858811
Target:  5'- gGCGGCaggGCgCCGCCACcucgaagGgCCAGCACUc -3'
miRNA:   3'- -CGCUGag-CG-GGUGGUG-------CgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 223593 0.66 0.837199
Target:  5'- cCGGCUCGCUugccaUACCGCGCgaCGGCGa- -3'
miRNA:   3'- cGCUGAGCGG-----GUGGUGCGg-GUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 223380 0.67 0.796799
Target:  5'- aGCGACaucgcggCGCCCcgacgcggGCCgugugGCGcCCCGGCGCg -3'
miRNA:   3'- -CGCUGa------GCGGG--------UGG-----UGC-GGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 223227 0.66 0.852259
Target:  5'- cGCGA--CGCCUGgCGCGUCCAGC-Cg -3'
miRNA:   3'- -CGCUgaGCGGGUgGUGCGGGUCGuGg -5'
14631 5' -60.3 NC_003521.1 + 222655 0.67 0.796799
Target:  5'- cGCGcagCGCCU-CCACgcuGCCCAGCAUg -3'
miRNA:   3'- -CGCugaGCGGGuGGUG---CGGGUCGUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.