miRNA display CGI


Results 1 - 20 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 240628 0.66 0.850044
Target:  5'- cGCGugUCGCUUGCCGCgggcgugcagggagGCCgaagCGGCgGCCg -3'
miRNA:   3'- -CGCugAGCGGGUGGUG--------------CGG----GUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 240389 0.66 0.837199
Target:  5'- gGCuGGCUuacCGCCgGCUugGCCucgcCAGCACa -3'
miRNA:   3'- -CG-CUGA---GCGGgUGGugCGG----GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 239890 0.66 0.837199
Target:  5'- aUGGCUCGgCUggugguguuaGCCaugaACGCCguGCGCCa -3'
miRNA:   3'- cGCUGAGCgGG----------UGG----UGCGGguCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 239854 0.66 0.820683
Target:  5'- aGCaGAC-CGCCgGCCucucguuGCGCCCAcuuGCGCa -3'
miRNA:   3'- -CG-CUGaGCGGgUGG-------UGCGGGU---CGUGg -5'
14631 5' -60.3 NC_003521.1 + 239503 0.68 0.762096
Target:  5'- cCGAUacaGCCgCGCCACuCgCCGGCGCCg -3'
miRNA:   3'- cGCUGag-CGG-GUGGUGcG-GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 239464 0.66 0.837199
Target:  5'- aGCGG-UgGCCCGCgGCGCguUCAGCcCCa -3'
miRNA:   3'- -CGCUgAgCGGGUGgUGCG--GGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 239289 0.66 0.858811
Target:  5'- aCGGCUCGuaguuuuccagcuCCUGCCAggaGCCCAGgAUCa -3'
miRNA:   3'- cGCUGAGC-------------GGGUGGUg--CGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 239181 0.7 0.63106
Target:  5'- aGCGACUgGgCagCACgACGCCCAGaaacaGCCa -3'
miRNA:   3'- -CGCUGAgCgG--GUGgUGCGGGUCg----UGG- -5'
14631 5' -60.3 NC_003521.1 + 237751 0.66 0.86662
Target:  5'- --aACUCGgaaCCAUCACGCauuCAGCAUCa -3'
miRNA:   3'- cgcUGAGCg--GGUGGUGCGg--GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 235971 0.68 0.753148
Target:  5'- cGCGAUUCGaCguCgACGCCC-GCACUg -3'
miRNA:   3'- -CGCUGAGCgGguGgUGCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 235131 0.68 0.7165
Target:  5'- gGUGACggCGCCCGuuccCCGCGgaCgGGCGCCc -3'
miRNA:   3'- -CGCUGa-GCGGGU----GGUGCg-GgUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 234995 0.67 0.779679
Target:  5'- -gGGCccCGgUCGCCGgGaCCCGGCACCa -3'
miRNA:   3'- cgCUGa-GCgGGUGGUgC-GGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 234757 0.66 0.844814
Target:  5'- aCGGCUgGCgUgAUCACGCCCuGCgggGCCg -3'
miRNA:   3'- cGCUGAgCG-GgUGGUGCGGGuCG---UGG- -5'
14631 5' -60.3 NC_003521.1 + 234088 0.67 0.779679
Target:  5'- uCGGCgagCGCUgGCUGCgucagGCCCuGCACCa -3'
miRNA:   3'- cGCUGa--GCGGgUGGUG-----CGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 233148 0.67 0.778811
Target:  5'- gGCGGgUucgUGCCCGCCggcuucaGCGUCUGGCAUCu -3'
miRNA:   3'- -CGCUgA---GCGGGUGG-------UGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 232978 0.7 0.640641
Target:  5'- -aGGC-CGUCCGCCACcCCCucgucuucuGGCGCCg -3'
miRNA:   3'- cgCUGaGCGGGUGGUGcGGG---------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 232399 0.66 0.85953
Target:  5'- cGCuGGCUgCGCCUGCggCACGgcaacgCCAGCGCCu -3'
miRNA:   3'- -CG-CUGA-GCGGGUG--GUGCg-----GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 231912 0.68 0.744107
Target:  5'- aGCGGCUCuUCUcCCGCGCcguagCCAGCuACCa -3'
miRNA:   3'- -CGCUGAGcGGGuGGUGCG-----GGUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 231268 0.67 0.788301
Target:  5'- aCGACUCGCUgGCgAgugUGCCUuGUACCg -3'
miRNA:   3'- cGCUGAGCGGgUGgU---GCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 228471 1.13 0.001083
Target:  5'- aGCGACUCGCCCACCACGCCCAGCACCa -3'
miRNA:   3'- -CGCUGAGCGGGUGGUGCGGGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.