miRNA display CGI


Results 1 - 20 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 79 0.66 0.850044
Target:  5'- cGCGugUCGCUUGCCGCgggcgugcagggagGCCgaagCGGCgGCCg -3'
miRNA:   3'- -CGCugAGCGGGUGGUG--------------CGG----GUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 2025 0.67 0.778811
Target:  5'- cGCGccccacaACUCGUCCGCUGCuaCCuGUGCCg -3'
miRNA:   3'- -CGC-------UGAGCGGGUGGUGcgGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 2143 0.67 0.796799
Target:  5'- aCGGC-CGCCgACC-UGCuCCAGCAgCa -3'
miRNA:   3'- cGCUGaGCGGgUGGuGCG-GGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 2210 0.66 0.85953
Target:  5'- aCGGC-CGgCC-CUACGCCCAG-GCCc -3'
miRNA:   3'- cGCUGaGCgGGuGGUGCGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 2359 0.76 0.330148
Target:  5'- cGCGuCUccgcccCGCCCGCCGaggcCGCCCuGCGCCu -3'
miRNA:   3'- -CGCuGA------GCGGGUGGU----GCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 2426 0.69 0.678841
Target:  5'- aGCGGCcccgcugggaCGCCCugCACGUUCAuccccGCGCCc -3'
miRNA:   3'- -CGCUGa---------GCGGGugGUGCGGGU-----CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 2828 0.69 0.65978
Target:  5'- gGCGACccagccgaccgaUCGCCgACgACGCCUGGUucgACCu -3'
miRNA:   3'- -CGCUG------------AGCGGgUGgUGCGGGUCG---UGG- -5'
14631 5' -60.3 NC_003521.1 + 3788 0.66 0.82942
Target:  5'- cGCGGCacaGagCACCGCGaUCCAGCACg -3'
miRNA:   3'- -CGCUGag-CggGUGGUGC-GGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 4322 0.79 0.206957
Target:  5'- gGgGGCUCGaCCguCCAUGCCUGGCGCCa -3'
miRNA:   3'- -CgCUGAGC-GGguGGUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 4359 0.69 0.669324
Target:  5'- gGCGGUUCGCUCAUCGCGgCCC-GCGuCCc -3'
miRNA:   3'- -CGCUGAGCGGGUGGUGC-GGGuCGU-GG- -5'
14631 5' -60.3 NC_003521.1 + 4431 0.69 0.687378
Target:  5'- cGCGACUC-CCgGagaACGCCCgaggcgaucugaaGGCACCg -3'
miRNA:   3'- -CGCUGAGcGGgUgg-UGCGGG-------------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 5319 0.68 0.762096
Target:  5'- gGCGGCgugcccCGCCgGCCGCGaCuCCGGCGa- -3'
miRNA:   3'- -CGCUGa-----GCGGgUGGUGC-G-GGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 5678 0.66 0.86662
Target:  5'- -aGACacgggCGCCCGuCCGCGgggaaCgGGCGCCg -3'
miRNA:   3'- cgCUGa----GCGGGU-GGUGCg----GgUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 7615 0.67 0.813398
Target:  5'- uGCGAa--GCCUauGCUACGCgCuGCGCCu -3'
miRNA:   3'- -CGCUgagCGGG--UGGUGCGgGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 11532 0.7 0.611905
Target:  5'- uCGACaugCGCCaguccuauCGCUACGCCUccGGCGCCg -3'
miRNA:   3'- cGCUGa--GCGG--------GUGGUGCGGG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 12588 0.71 0.554947
Target:  5'- gGCGGCa--CCCACCACGaCCAGCguACCu -3'
miRNA:   3'- -CGCUGagcGGGUGGUGCgGGUCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 13875 0.66 0.82942
Target:  5'- gGCGGCgcCGCCauggauuuCGCCGggggGCCCGGCGCg -3'
miRNA:   3'- -CGCUGa-GCGG--------GUGGUg---CGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 14328 0.66 0.821485
Target:  5'- cGCGcauCUaCGCCUAcgacacCCGCGaCCAGUACCu -3'
miRNA:   3'- -CGCu--GA-GCGGGU------GGUGCgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 14454 0.68 0.762096
Target:  5'- uGCGGCggCGUcagCCGCCGCuCCCgcGGCGCUa -3'
miRNA:   3'- -CGCUGa-GCG---GGUGGUGcGGG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 14542 0.71 0.592804
Target:  5'- -gGGCUCGUaCGCCACgGCCgAGCGCa -3'
miRNA:   3'- cgCUGAGCGgGUGGUG-CGGgUCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.