miRNA display CGI


Results 41 - 60 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 202438 0.66 0.85953
Target:  5'- aCGGC-CGgCC-CUACGCCCAG-GCCc -3'
miRNA:   3'- cGCUGaGCgGGuGGUGCGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 117341 0.66 0.85953
Target:  5'- cGCuuucuuCUCGCUCAUCGgGgCCAGuCGCCa -3'
miRNA:   3'- -CGcu----GAGCGGGUGGUgCgGGUC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 126045 0.66 0.85953
Target:  5'- uCGugUCGCcgggcuCCACCACGCUacgCAaCACCc -3'
miRNA:   3'- cGCugAGCG------GGUGGUGCGG---GUcGUGG- -5'
14631 5' -60.3 NC_003521.1 + 149243 0.66 0.85953
Target:  5'- cGCGGCUacuaCGCCUacgacgugGCCAUGUCguuccgcguCGGCGCCc -3'
miRNA:   3'- -CGCUGA----GCGGG--------UGGUGCGG---------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 174536 0.66 0.85953
Target:  5'- uCGGCUgUGCCCGCCAgucCGCCUcccuccuGCugCu -3'
miRNA:   3'- cGCUGA-GCGGGUGGU---GCGGGu------CGugG- -5'
14631 5' -60.3 NC_003521.1 + 225764 0.66 0.85953
Target:  5'- uGCaGCaCGCgCCGCuCGCGCUC-GCGCCg -3'
miRNA:   3'- -CGcUGaGCG-GGUG-GUGCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 111908 0.66 0.85953
Target:  5'- cGCGcCagGCCCucaACCGCaUCCAGCGCa -3'
miRNA:   3'- -CGCuGagCGGG---UGGUGcGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 129911 0.66 0.85953
Target:  5'- gGCGGCcgcgCGCCugcugcgcgaaCACCugGCCgagaCGGCGCa -3'
miRNA:   3'- -CGCUGa---GCGG-----------GUGGugCGG----GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 144178 0.66 0.85953
Target:  5'- cCGGCgcCGCCUGCCGCGCgCUggagaacggcaAGCugCa -3'
miRNA:   3'- cGCUGa-GCGGGUGGUGCG-GG-----------UCGugG- -5'
14631 5' -60.3 NC_003521.1 + 176508 0.66 0.85953
Target:  5'- --uGCUCGUgUACCAUGgCCAGCGUCg -3'
miRNA:   3'- cgcUGAGCGgGUGGUGCgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 72218 0.66 0.85953
Target:  5'- aUGGCgcaCGCCCAgcagcCCAUGUCCAuGcCGCCg -3'
miRNA:   3'- cGCUGa--GCGGGU-----GGUGCGGGU-C-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 141113 0.66 0.85953
Target:  5'- uGCGGCcCGCgCAgcuuCUGCGCCCGcGaCACCu -3'
miRNA:   3'- -CGCUGaGCGgGU----GGUGCGGGU-C-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 44568 0.66 0.85953
Target:  5'- cGCGGgUa-CCCggaaccacagaaACCGCGCCaGGCGCCa -3'
miRNA:   3'- -CGCUgAgcGGG------------UGGUGCGGgUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 110073 0.66 0.85953
Target:  5'- cGCGGCgcucgCGCCCGCCgacACGUCCcG-ACUc -3'
miRNA:   3'- -CGCUGa----GCGGGUGG---UGCGGGuCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 129401 0.66 0.85953
Target:  5'- uGCG-CUUGCCCGCC-CGCUugCAGaaaugggggaGCCg -3'
miRNA:   3'- -CGCuGAGCGGGUGGuGCGG--GUCg---------UGG- -5'
14631 5' -60.3 NC_003521.1 + 127253 0.66 0.85953
Target:  5'- -aGGCccaGCCCcACCGCGUCCuccucGCGCUg -3'
miRNA:   3'- cgCUGag-CGGG-UGGUGCGGGu----CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 200023 0.66 0.85953
Target:  5'- gGCGAauaGCUgACCGCGCCgGGaguCCg -3'
miRNA:   3'- -CGCUgagCGGgUGGUGCGGgUCgu-GG- -5'
14631 5' -60.3 NC_003521.1 + 2210 0.66 0.85953
Target:  5'- aCGGC-CGgCC-CUACGCCCAG-GCCc -3'
miRNA:   3'- cGCUGaGCgGGuGGUGCGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 188304 0.66 0.85953
Target:  5'- gGCGGCUCuucUUCGCCGCGCUCucUACCg -3'
miRNA:   3'- -CGCUGAGc--GGGUGGUGCGGGucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 26501 0.66 0.85953
Target:  5'- cGCGAUgCGCucuucaCCACCACGCUgcuCACCg -3'
miRNA:   3'- -CGCUGaGCG------GGUGGUGCGGgucGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.