miRNA display CGI


Results 61 - 80 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 220373 0.66 0.85953
Target:  5'- uGCGAUUCugcgggaaGCCCAgCCAgaagacgcUGCCCAG-GCCg -3'
miRNA:   3'- -CGCUGAG--------CGGGU-GGU--------GCGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 165496 0.66 0.85953
Target:  5'- -gGuACUCGCagcuCUGCGCCuCGGCGCCc -3'
miRNA:   3'- cgC-UGAGCGggu-GGUGCGG-GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 56149 0.66 0.858811
Target:  5'- uGCGGCUCGUgCugCuCGCUgcgcgcgaacacgCAGCGCg -3'
miRNA:   3'- -CGCUGAGCGgGugGuGCGG-------------GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 122670 0.66 0.858811
Target:  5'- cGCGAUcgaggCGCCCAgCACcgacagcugcgggGCCggucgguugugCAGCGCCg -3'
miRNA:   3'- -CGCUGa----GCGGGUgGUG-------------CGG-----------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 39061 0.66 0.858811
Target:  5'- aCGGCUCGuaguuuuccagcuCCUGCCAggaGCCCAGgAUCa -3'
miRNA:   3'- cGCUGAGC-------------GGGUGGUg--CGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 94423 0.66 0.858811
Target:  5'- cGCGGCg-GCCCAUgACGUCUcucagggGGuCGCCg -3'
miRNA:   3'- -CGCUGagCGGGUGgUGCGGG-------UC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 44447 0.66 0.858811
Target:  5'- gGCGGCUCGgCgaugcgaguacaaCGCCACGCacuaCCuGCACg -3'
miRNA:   3'- -CGCUGAGCgG-------------GUGGUGCG----GGuCGUGg -5'
14631 5' -60.3 NC_003521.1 + 143034 0.66 0.858811
Target:  5'- cGCGGCUaGCaCCuuCCGCGaCCUggaugguggugguGGCGCCg -3'
miRNA:   3'- -CGCUGAgCG-GGu-GGUGC-GGG-------------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 239289 0.66 0.858811
Target:  5'- aCGGCUCGuaguuuuccagcuCCUGCCAggaGCCCAGgAUCa -3'
miRNA:   3'- cGCUGAGC-------------GGGUGGUg--CGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 53170 0.66 0.858811
Target:  5'- cGCGGC-CGCCCucGCCGaugaagaUGgCCAGCGgCg -3'
miRNA:   3'- -CGCUGaGCGGG--UGGU-------GCgGGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 224614 0.66 0.858811
Target:  5'- gGCGGCaggGCgCCGCCACcucgaagGgCCAGCACUc -3'
miRNA:   3'- -CGCUGag-CG-GGUGGUG-------CgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 129750 0.66 0.857367
Target:  5'- cGCGccgucuucGC-CGCCCucuACCGCGCCUGucccgcgcacgugcGCGCCg -3'
miRNA:   3'- -CGC--------UGaGCGGG---UGGUGCGGGU--------------CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 152947 0.66 0.855189
Target:  5'- -gGAuUUCGUCCACCuGCGCCUcgaucugcuccuccaGGCACUu -3'
miRNA:   3'- cgCU-GAGCGGGUGG-UGCGGG---------------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 212076 0.66 0.852259
Target:  5'- gGUGGCgcgGCCCGCgCGCGUCUGGUugUc -3'
miRNA:   3'- -CGCUGag-CGGGUG-GUGCGGGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 150701 0.66 0.852259
Target:  5'- uGgGAUcCGCCCACUaggggGCGUaCCuaGGCACCg -3'
miRNA:   3'- -CgCUGaGCGGGUGG-----UGCG-GG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 71881 0.66 0.852259
Target:  5'- uGCGGCUCuCCCAgUA-GCUCAGCAg- -3'
miRNA:   3'- -CGCUGAGcGGGUgGUgCGGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 149767 0.66 0.852259
Target:  5'- gGCGGC-CGCgCGgUACGCCuCAaCGCCa -3'
miRNA:   3'- -CGCUGaGCGgGUgGUGCGG-GUcGUGG- -5'
14631 5' -60.3 NC_003521.1 + 139879 0.66 0.852259
Target:  5'- cGCGguacaGCUCGgUCAgCGCGUCCAGCuuCu -3'
miRNA:   3'- -CGC-----UGAGCgGGUgGUGCGGGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 174304 0.66 0.852259
Target:  5'- gGCGAuCUUGUCCAgCUGCGCcuugaaauCCAGC-CCg -3'
miRNA:   3'- -CGCU-GAGCGGGU-GGUGCG--------GGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 85716 0.66 0.852259
Target:  5'- -aGAa--GUCCuCCACGCCCugcuccugcAGCGCCg -3'
miRNA:   3'- cgCUgagCGGGuGGUGCGGG---------UCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.