Results 21 - 40 of 720 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14631 | 5' | -60.3 | NC_003521.1 | + | 163067 | 0.75 | 0.374048 |
Target: 5'- cGCGACUacauccUGCCCaACCACuaCCAGaCGCCg -3' miRNA: 3'- -CGCUGA------GCGGG-UGGUGcgGGUC-GUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 76043 | 0.75 | 0.350881 |
Target: 5'- aCGACccgUGCCCGCCGCgucacuaugguucGCCCGGCgACCg -3' miRNA: 3'- cGCUGa--GCGGGUGGUG-------------CGGGUCG-UGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 173248 | 0.77 | 0.283883 |
Target: 5'- gGCGACUCugGCCCGCgGgGCCCGcCGCCu -3' miRNA: 3'- -CGCUGAG--CGGGUGgUgCGGGUcGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 197683 | 0.79 | 0.202215 |
Target: 5'- aGCG-CgUGCaCCuCCACGCCCAGCGCCg -3' miRNA: 3'- -CGCuGaGCG-GGuGGUGCGGGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 167967 | 0.73 | 0.455493 |
Target: 5'- aCGAC-CGCCgugccuaccguCGCCGCGCCCAG-GCCg -3' miRNA: 3'- cGCUGaGCGG-----------GUGGUGCGGGUCgUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 96742 | 0.74 | 0.397434 |
Target: 5'- -aGGCagaaGCCCAgCACguuGCCCAGCGCCg -3' miRNA: 3'- cgCUGag--CGGGUgGUG---CGGGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 27796 | 0.76 | 0.337194 |
Target: 5'- cCGGCcCGCUCgGCCGgcuCGCCCGGCGCCa -3' miRNA: 3'- cGCUGaGCGGG-UGGU---GCGGGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 91193 | 0.8 | 0.193014 |
Target: 5'- aGCacCUCGCCgGCgGCGUCCAGCGCCg -3' miRNA: 3'- -CGcuGAGCGGgUGgUGCGGGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 126956 | 0.74 | 0.389534 |
Target: 5'- cGUGACggCGCuuacaccaCCGCCACGCucggaagaaaccCCAGCACCa -3' miRNA: 3'- -CGCUGa-GCG--------GGUGGUGCG------------GGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 16398 | 0.8 | 0.184181 |
Target: 5'- --cGCUCGCCCACCACGC--AGCGCCu -3' miRNA: 3'- cgcUGAGCGGGUGGUGCGggUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 110572 | 0.75 | 0.344349 |
Target: 5'- aCGuAgUCGUCCACCucacugACGCCCAGCACg -3' miRNA: 3'- cGC-UgAGCGGGUGG------UGCGGGUCGUGg -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 173932 | 0.75 | 0.378649 |
Target: 5'- -gGACUCGCCCuugggcgucaccaACugcucggugccgaaCACGUCCAGCACCu -3' miRNA: 3'- cgCUGAGCGGG-------------UG--------------GUGCGGGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 47506 | 0.76 | 0.309666 |
Target: 5'- gGCGACcacccccaccgUGCCCACCAC-CCCcGCGCCg -3' miRNA: 3'- -CGCUGa----------GCGGGUGGUGcGGGuCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 16795 | 0.77 | 0.283883 |
Target: 5'- gGCGACggCGCCCGCCccgacCGCCgGGCccGCCg -3' miRNA: 3'- -CGCUGa-GCGGGUGGu----GCGGgUCG--UGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 25369 | 0.78 | 0.25408 |
Target: 5'- cGUGGCUC-CCUcgGCCugGCgCCAGCACCc -3' miRNA: 3'- -CGCUGAGcGGG--UGGugCG-GGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 60421 | 0.79 | 0.213758 |
Target: 5'- cGCGGC-CGCCagCACCaccagcaguacuccgGCGCCCAGUACCa -3' miRNA: 3'- -CGCUGaGCGG--GUGG---------------UGCGGGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 93931 | 0.73 | 0.472909 |
Target: 5'- gGCGACUaccgcUGCCCGCCGuCGUCUGGCuuCCu -3' miRNA: 3'- -CGCUGA-----GCGGGUGGU-GCGGGUCGu-GG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 207623 | 0.73 | 0.455493 |
Target: 5'- gGCGGCUCGCCgGCC-UGCaCCuuCACCu -3' miRNA: 3'- -CGCUGAGCGGgUGGuGCG-GGucGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 100237 | 0.74 | 0.430036 |
Target: 5'- aGCGuCUCGCCgGCCGCGaaauCCUcgggcGGCGCCu -3' miRNA: 3'- -CGCuGAGCGGgUGGUGC----GGG-----UCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 85383 | 0.74 | 0.397434 |
Target: 5'- uGCGACUCGCCCAgCGgguCGgCCAGC-UCg -3' miRNA: 3'- -CGCUGAGCGGGUgGU---GCgGGUCGuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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