miRNA display CGI


Results 1 - 20 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 111605 0.81 0.171602
Target:  5'- aGCGGCgccggacUGCCCACCACGCgCCAGacCACCa -3'
miRNA:   3'- -CGCUGa------GCGGGUGGUGCG-GGUC--GUGG- -5'
14631 5' -60.3 NC_003521.1 + 27796 0.76 0.337194
Target:  5'- cCGGCcCGCUCgGCCGgcuCGCCCGGCGCCa -3'
miRNA:   3'- cGCUGaGCGGG-UGGU---GCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 76043 0.75 0.350881
Target:  5'- aCGACccgUGCCCGCCGCgucacuaugguucGCCCGGCgACCg -3'
miRNA:   3'- cGCUGa--GCGGGUGGUG-------------CGGGUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 105020 0.66 0.86662
Target:  5'- cGCGcCUCcCuCCGCCGCuGCUccuccucccgCAGCGCCa -3'
miRNA:   3'- -CGCuGAGcG-GGUGGUG-CGG----------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 60421 0.79 0.213758
Target:  5'- cGCGGC-CGCCagCACCaccagcaguacuccgGCGCCCAGUACCa -3'
miRNA:   3'- -CGCUGaGCGG--GUGG---------------UGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 129607 0.79 0.226896
Target:  5'- cCGugUCGCCCacuuuccggcGCCAuCGCCCAGC-CCa -3'
miRNA:   3'- cGCugAGCGGG----------UGGU-GCGGGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 25369 0.78 0.25408
Target:  5'- cGUGGCUC-CCUcgGCCugGCgCCAGCACCc -3'
miRNA:   3'- -CGCUGAGcGGG--UGGugCG-GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 203006 0.77 0.265092
Target:  5'- gGCGGCUCGCCCGCCAagacggGUUCGGCggugauaGCCg -3'
miRNA:   3'- -CGCUGAGCGGGUGGUg-----CGGGUCG-------UGG- -5'
14631 5' -60.3 NC_003521.1 + 16795 0.77 0.283883
Target:  5'- gGCGACggCGCCCGCCccgacCGCCgGGCccGCCg -3'
miRNA:   3'- -CGCUGa-GCGGGUGGu----GCGGgUCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 2359 0.76 0.330148
Target:  5'- cGCGuCUccgcccCGCCCGCCGaggcCGCCCuGCGCCu -3'
miRNA:   3'- -CGCuGA------GCGGGUGGU----GCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 115542 0.77 0.290166
Target:  5'- cGCGGCUCGCCUgACggaGCGCCguGCugCg -3'
miRNA:   3'- -CGCUGAGCGGG-UGg--UGCGGguCGugG- -5'
14631 5' -60.3 NC_003521.1 + 173248 0.77 0.283883
Target:  5'- gGCGACUCugGCCCGCgGgGCCCGcCGCCu -3'
miRNA:   3'- -CGCUGAG--CGGGUGgUgCGGGUcGUGG- -5'
14631 5' -60.3 NC_003521.1 + 16398 0.8 0.184181
Target:  5'- --cGCUCGCCCACCACGC--AGCGCCu -3'
miRNA:   3'- cgcUGAGCGGGUGGUGCGggUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 47506 0.76 0.309666
Target:  5'- gGCGACcacccccaccgUGCCCACCAC-CCCcGCGCCg -3'
miRNA:   3'- -CGCUGa----------GCGGGUGGUGcGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 91193 0.8 0.193014
Target:  5'- aGCacCUCGCCgGCgGCGUCCAGCGCCg -3'
miRNA:   3'- -CGcuGAGCGGgUGgUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 26005 0.77 0.277709
Target:  5'- -gGAacCGCCguCGCCGCGCCCGGCGCCc -3'
miRNA:   3'- cgCUgaGCGG--GUGGUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 206413 0.76 0.330148
Target:  5'- cGCGACgcccagcugaUC-CUCACCugGCCCgAGCGCCa -3'
miRNA:   3'- -CGCUG----------AGcGGGUGGugCGGG-UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 110572 0.75 0.344349
Target:  5'- aCGuAgUCGUCCACCucacugACGCCCAGCACg -3'
miRNA:   3'- cGC-UgAGCGGGUGG------UGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 197683 0.79 0.202215
Target:  5'- aGCG-CgUGCaCCuCCACGCCCAGCGCCg -3'
miRNA:   3'- -CGCuGaGCG-GGuGGUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 95186 0.78 0.242898
Target:  5'- cGCG-CUCGgCgCGgaacuCCACGCCCGGCACCg -3'
miRNA:   3'- -CGCuGAGCgG-GU-----GGUGCGGGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.