miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14632 3' -47.1 NC_003521.1 + 98296 0.66 0.999987
Target:  5'- -aCUCCUCaGgGaAGAGGAGGAAGUg -3'
miRNA:   3'- uaGAGGAGgUgCaUCUCUUUCUUUAg -5'
14632 3' -47.1 NC_003521.1 + 13054 0.68 0.999824
Target:  5'- -aCUCCUCCGac--GAGGAAGAGAa- -3'
miRNA:   3'- uaGAGGAGGUgcauCUCUUUCUUUag -5'
14632 3' -47.1 NC_003521.1 + 172715 0.69 0.999431
Target:  5'- cGUCUCCgUCCACGUcuuGGAGAccagcggguuGAGGuugaGAUCc -3'
miRNA:   3'- -UAGAGG-AGGUGCA---UCUCU----------UUCU----UUAG- -5'
14632 3' -47.1 NC_003521.1 + 11902 0.69 0.999431
Target:  5'- -cUUUCUCUACGUGGA---GGAGAUCg -3'
miRNA:   3'- uaGAGGAGGUGCAUCUcuuUCUUUAG- -5'
14632 3' -47.1 NC_003521.1 + 120519 0.69 0.999132
Target:  5'- gAUCUCCUUCGCccGGGGAAGGGc--- -3'
miRNA:   3'- -UAGAGGAGGUGcaUCUCUUUCUuuag -5'
14632 3' -47.1 NC_003521.1 + 236402 0.71 0.996244
Target:  5'- uUCUCCgggagUCGCGaaagccgGGAGGAGGAGGUCc -3'
miRNA:   3'- uAGAGGa----GGUGCa------UCUCUUUCUUUAG- -5'
14632 3' -47.1 NC_003521.1 + 37320 0.71 0.995591
Target:  5'- cGUCUCCUCUggGUGGGGGcggucgcgGAGGAcgCa -3'
miRNA:   3'- -UAGAGGAGGugCAUCUCU--------UUCUUuaG- -5'
14632 3' -47.1 NC_003521.1 + 93417 0.71 0.994849
Target:  5'- -gCUCUgaaaaCCACGUccGAGGAGGAGAUCg -3'
miRNA:   3'- uaGAGGa----GGUGCAu-CUCUUUCUUUAG- -5'
14632 3' -47.1 NC_003521.1 + 178155 0.72 0.99306
Target:  5'- --gUCCagCAUGUAGAGAAAGAGggcGUCg -3'
miRNA:   3'- uagAGGagGUGCAUCUCUUUCUU---UAG- -5'
14632 3' -47.1 NC_003521.1 + 75952 0.84 0.596576
Target:  5'- uUCUCCUCCGCGaccuucucgucgaGGAGGAAGAAGUCu -3'
miRNA:   3'- uAGAGGAGGUGCa------------UCUCUUUCUUUAG- -5'
14632 3' -47.1 NC_003521.1 + 34478 0.66 0.99999
Target:  5'- uUUUCCcCUACGUAGG---GGAAAUCa -3'
miRNA:   3'- uAGAGGaGGUGCAUCUcuuUCUUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.