miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 3' -64.2 NC_003521.1 + 112265 0.68 0.560199
Target:  5'- uGGCCGacuucaacUCCUacaAGGGCcaccuGAcGUCGGGCCa -3'
miRNA:   3'- cUCGGC--------AGGGg--UCCCG-----CU-CAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 118533 0.66 0.699912
Target:  5'- aAGCCGggauUCCCCAc-GCGGcUUGGGCCg -3'
miRNA:   3'- cUCGGC----AGGGGUccCGCUcAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 129654 0.68 0.560199
Target:  5'- -cGCCGUCgCCGGGGCG-GcCGcGCUa -3'
miRNA:   3'- cuCGGCAGgGGUCCCGCuCaGCcCGG- -5'
14633 3' -64.2 NC_003521.1 + 77010 0.66 0.6628
Target:  5'- -cGCCGUCCa-GGGGCagcaugcGGUUGaGGCCg -3'
miRNA:   3'- cuCGGCAGGggUCCCGc------UCAGC-CCGG- -5'
14633 3' -64.2 NC_003521.1 + 169519 0.66 0.644092
Target:  5'- -cGCCG-CCCCAGGuGCuGGUgccccagGGGCCc -3'
miRNA:   3'- cuCGGCaGGGGUCC-CGcUCAg------CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 119930 0.66 0.699912
Target:  5'- cAGCCGcCCCCGaccaccugcacGGGCGuGaugacgCGcGGCCg -3'
miRNA:   3'- cUCGGCaGGGGU-----------CCCGCuCa-----GC-CCGG- -5'
14633 3' -64.2 NC_003521.1 + 197837 0.66 0.690689
Target:  5'- cGGCCGUCUgCAggucgucgguGGGCGccGG-CGGGUCg -3'
miRNA:   3'- cUCGGCAGGgGU----------CCCGC--UCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 35230 0.71 0.364757
Target:  5'- cGAG-CGUCCUCGGGGCGcgagacggcacagaGGUCGGGagaCa -3'
miRNA:   3'- -CUCgGCAGGGGUCCCGC--------------UCAGCCCg--G- -5'
14633 3' -64.2 NC_003521.1 + 47546 0.66 0.652518
Target:  5'- aGGUCGUCCaugucgagCGGggaagacGGCGAG-CGGGCCa -3'
miRNA:   3'- cUCGGCAGGg-------GUC-------CCGCUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 155441 0.71 0.405083
Target:  5'- uGGCCGaCCCgCuGGGCGAGUCGcagcaGCCc -3'
miRNA:   3'- cUCGGCaGGG-GuCCCGCUCAGCc----CGG- -5'
14633 3' -64.2 NC_003521.1 + 70337 0.7 0.453976
Target:  5'- -cGCCGUCCagCAGGGCGuugagcuuGUCGGcgggguagaGCCg -3'
miRNA:   3'- cuCGGCAGGg-GUCCCGCu-------CAGCC---------CGG- -5'
14633 3' -64.2 NC_003521.1 + 166065 0.66 0.644092
Target:  5'- uAGCCagcauccacUCCCgCAGGGCcauagcggGAG-CGGGCCg -3'
miRNA:   3'- cUCGGc--------AGGG-GUCCCG--------CUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 60690 0.66 0.644092
Target:  5'- cGGCCGcgcgggggaCCCgGGGGCGGcgCGGGUCg -3'
miRNA:   3'- cUCGGCa--------GGGgUCCCGCUcaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 46870 0.66 0.643156
Target:  5'- -cGCCGUCgugggUCCAGaaGGCGAaguggguGUCGGGCa -3'
miRNA:   3'- cuCGGCAG-----GGGUC--CCGCU-------CAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 238559 0.67 0.634724
Target:  5'- uGGCCGUCCUgGGGGC-AGUa--GCCg -3'
miRNA:   3'- cUCGGCAGGGgUCCCGcUCAgccCGG- -5'
14633 3' -64.2 NC_003521.1 + 101956 0.67 0.634724
Target:  5'- aGGCUGUUCUCGGGGUgcGAGaUgGGGUCc -3'
miRNA:   3'- cUCGGCAGGGGUCCCG--CUC-AgCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 130280 0.67 0.624416
Target:  5'- -cGCCcUCUCCGgcuaccuGGGCGAGgccgCGGcGCCg -3'
miRNA:   3'- cuCGGcAGGGGU-------CCCGCUCa---GCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 168408 0.69 0.514804
Target:  5'- -cGCCGUUgguggCUAGGGCGGGcggcaGGGCCg -3'
miRNA:   3'- cuCGGCAGg----GGUCCCGCUCag---CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 172339 0.69 0.505898
Target:  5'- cGGCCGUCCUguggCAcacgucGGGCGGGU-GGGUCa -3'
miRNA:   3'- cUCGGCAGGG----GU------CCCGCUCAgCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 223446 0.69 0.488289
Target:  5'- gGAGCgGUCCCUcu--CGAGUCuGGGCCg -3'
miRNA:   3'- -CUCGgCAGGGGucccGCUCAG-CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.