miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 3' -64.2 NC_003521.1 + 119930 0.66 0.699912
Target:  5'- cAGCCGcCCCCGaccaccugcacGGGCGuGaugacgCGcGGCCg -3'
miRNA:   3'- cUCGGCaGGGGU-----------CCCGCuCa-----GC-CCGG- -5'
14633 3' -64.2 NC_003521.1 + 122463 0.7 0.428305
Target:  5'- aGAGCCGacgguucaagUCCaCCAuguccuuGGGCGGGUUcugcaGGGCCa -3'
miRNA:   3'- -CUCGGC----------AGG-GGU-------CCCGCUCAG-----CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 124193 0.7 0.445603
Target:  5'- -uGCCGg-CUgGGGGUGAG-CGGGCCc -3'
miRNA:   3'- cuCGGCagGGgUCCCGCUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 125746 0.67 0.597291
Target:  5'- aGGGCaggGUUUCU-GGGCGAcGUCGGGCUu -3'
miRNA:   3'- -CUCGg--CAGGGGuCCCGCU-CAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 128372 0.67 0.615987
Target:  5'- cGGGCgCGcCCaCCAGGGCcgccUGGGCCg -3'
miRNA:   3'- -CUCG-GCaGG-GGUCCCGcucaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 129654 0.68 0.560199
Target:  5'- -cGCCGUCgCCGGGGCG-GcCGcGCUa -3'
miRNA:   3'- cuCGGCAGgGGUCCCGCuCaGCcCGG- -5'
14633 3' -64.2 NC_003521.1 + 130280 0.67 0.624416
Target:  5'- -cGCCcUCUCCGgcuaccuGGGCGAGgccgCGGcGCCg -3'
miRNA:   3'- cuCGGcAGGGGU-------CCCGCUCa---GCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 131037 0.72 0.324584
Target:  5'- --cCCGUCUCCuGGGCGGcGgcggCGGGCCu -3'
miRNA:   3'- cucGGCAGGGGuCCCGCU-Ca---GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 135363 0.66 0.690689
Target:  5'- -cGCCGUCUCCGcGGCG-GUuaucgcccgCGGGCg -3'
miRNA:   3'- cuCGGCAGGGGUcCCGCuCA---------GCCCGg -5'
14633 3' -64.2 NC_003521.1 + 135765 0.66 0.672125
Target:  5'- uGGGaUCGcCCCUGGGGCugcucgcgcacGGG-CGGGCCg -3'
miRNA:   3'- -CUC-GGCaGGGGUCCCG-----------CUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 142770 0.66 0.6628
Target:  5'- cAG-CGUCCgCGGcGGCGucGUCGGuGCCa -3'
miRNA:   3'- cUCgGCAGGgGUC-CCGCu-CAGCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 149417 0.66 0.694383
Target:  5'- cGGUCGcCCUguGGGCcgggauuugggucggGGGUCcGGGCCc -3'
miRNA:   3'- cUCGGCaGGGguCCCG---------------CUCAG-CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 151091 0.71 0.374388
Target:  5'- -cGCCGaCCCCu---CGGGUCGGGCCg -3'
miRNA:   3'- cuCGGCaGGGGucccGCUCAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 155441 0.71 0.405083
Target:  5'- uGGCCGaCCCgCuGGGCGAGUCGcagcaGCCc -3'
miRNA:   3'- cUCGGCaGGG-GuCCCGCUCAGCc----CGG- -5'
14633 3' -64.2 NC_003521.1 + 155488 0.66 0.672125
Target:  5'- -cGCCGg-CCUGcGGCGGGccgCGGGCCa -3'
miRNA:   3'- cuCGGCagGGGUcCCGCUCa--GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 156887 0.68 0.532801
Target:  5'- cGGCCGcUgCCCgauggcacggGGGGCGA--CGGGCCg -3'
miRNA:   3'- cUCGGC-AgGGG----------UCCCGCUcaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 164986 0.7 0.462434
Target:  5'- -cGCCcaucuUCCCCgAGGGCGAGaUC-GGCCg -3'
miRNA:   3'- cuCGGc----AGGGG-UCCCGCUC-AGcCCGG- -5'
14633 3' -64.2 NC_003521.1 + 166065 0.66 0.644092
Target:  5'- uAGCCagcauccacUCCCgCAGGGCcauagcggGAG-CGGGCCg -3'
miRNA:   3'- cUCGGc--------AGGG-GUCCCG--------CUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 166246 0.68 0.560199
Target:  5'- -uGCCG-CCC---GGCGAG-CGGGCCg -3'
miRNA:   3'- cuCGGCaGGGgucCCGCUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 168408 0.69 0.514804
Target:  5'- -cGCCGUUgguggCUAGGGCGGGcggcaGGGCCg -3'
miRNA:   3'- cuCGGCAGg----GGUCCCGCUCag---CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.