miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 3' -64.2 NC_003521.1 + 83554 0.67 0.634724
Target:  5'- -cGCCGUugCCCCGGaaaGGCGA--CGGGUCu -3'
miRNA:   3'- cuCGGCA--GGGGUC---CCGCUcaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 87719 0.68 0.540974
Target:  5'- -uGCCGUCgcgcgcgCCCGGcGGCGuGgUGGGCCc -3'
miRNA:   3'- cuCGGCAG-------GGGUC-CCGCuCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 87784 0.68 0.578681
Target:  5'- gGGGCCG-CCUCGucggucucGGGCGGccUGGGCCa -3'
miRNA:   3'- -CUCGGCaGGGGU--------CCCGCUcaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 88434 0.7 0.424245
Target:  5'- -uGCgCGUCUCCAGGGagacgucguccgccuCGGcGUCGGGCUg -3'
miRNA:   3'- cuCG-GCAGGGGUCCC---------------GCU-CAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 88473 0.67 0.587973
Target:  5'- cGGCCGgCCCCAGagcaGCGucGGcgCGGGCCc -3'
miRNA:   3'- cUCGGCaGGGGUCc---CGC--UCa-GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 92113 0.73 0.31129
Target:  5'- cGGGUCGgaacCCCCGGGuGCGGuUCGGGCg -3'
miRNA:   3'- -CUCGGCa---GGGGUCC-CGCUcAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 93947 0.68 0.550103
Target:  5'- -cGCCGucgucuggcuuccUCCUCuGGGCGGGagGGGCg -3'
miRNA:   3'- cuCGGC-------------AGGGGuCCCGCUCagCCCGg -5'
14633 3' -64.2 NC_003521.1 + 101956 0.67 0.634724
Target:  5'- aGGCUGUUCUCGGGGUgcGAGaUgGGGUCc -3'
miRNA:   3'- cUCGGCAGGGGUCCCG--CUC-AgCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 102839 0.66 0.672125
Target:  5'- cGAGaaGcgCgCCAGGGCGcccguggcguaGGUCuGGGCCg -3'
miRNA:   3'- -CUCggCa-GgGGUCCCGC-----------UCAG-CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 104116 0.71 0.374388
Target:  5'- -uGCCaGUCCUCGGcGGCGuccuGcUCGGGCCc -3'
miRNA:   3'- cuCGG-CAGGGGUC-CCGCu---C-AGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 106529 0.67 0.587973
Target:  5'- uGGCgGUUCCCAGaagcgcugaaaGcGCGAGU-GGGCCg -3'
miRNA:   3'- cUCGgCAGGGGUC-----------C-CGCUCAgCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 112261 0.67 0.587973
Target:  5'- -cGCCGU-CCCAGGG-GAGUCacGGCg -3'
miRNA:   3'- cuCGGCAgGGGUCCCgCUCAGc-CCGg -5'
14633 3' -64.2 NC_003521.1 + 112265 0.68 0.560199
Target:  5'- uGGCCGacuucaacUCCUacaAGGGCcaccuGAcGUCGGGCCa -3'
miRNA:   3'- cUCGGC--------AGGGg--UCCCG-----CU-CAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 113341 0.66 0.681424
Target:  5'- -cGCCGgggggCuUCCAGGGgGA--CGGGCCg -3'
miRNA:   3'- cuCGGCa----G-GGGUCCCgCUcaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 113977 0.67 0.606631
Target:  5'- cGAGCUGUUCCUGGcGGUGcAGUucgUGGGCg -3'
miRNA:   3'- -CUCGGCAGGGGUC-CCGC-UCA---GCCCGg -5'
14633 3' -64.2 NC_003521.1 + 115655 0.66 0.699912
Target:  5'- -uGUCGgcgCCCCAGuGGCGGGUgaagaagGcGGCCa -3'
miRNA:   3'- cuCGGCa--GGGGUC-CCGCUCAg------C-CCGG- -5'
14633 3' -64.2 NC_003521.1 + 115713 0.66 0.659063
Target:  5'- cAG-CGUgCCCAGGGagaaGAGgauguugccguugCGGGCCa -3'
miRNA:   3'- cUCgGCAgGGGUCCCg---CUCa------------GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 116714 0.67 0.587973
Target:  5'- -cGCCGUCCacuuccaCGGcGGUcccgGAGUCGGcGCCc -3'
miRNA:   3'- cuCGGCAGGg------GUC-CCG----CUCAGCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 118225 0.73 0.27988
Target:  5'- -cGCCGUCgCCGGGGUGGucaaugccucguGUCGGGUg -3'
miRNA:   3'- cuCGGCAGgGGUCCCGCU------------CAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 118533 0.66 0.699912
Target:  5'- aAGCCGggauUCCCCAc-GCGGcUUGGGCCg -3'
miRNA:   3'- cUCGGC----AGGGGUccCGCUcAGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.