miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 3' -64.2 NC_003521.1 + 186487 0.69 0.518384
Target:  5'- cGAGUgG--CCCAGGGCGAGagccccgucgggaucUCGGGCg -3'
miRNA:   3'- -CUCGgCagGGGUCCCGCUC---------------AGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 186297 0.7 0.461584
Target:  5'- -cGCCGggCCCCAGcGGCGccgugcagauccuGGUCcacgccGGGCCg -3'
miRNA:   3'- cuCGGCa-GGGGUC-CCGC-------------UCAG------CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 177773 0.7 0.453976
Target:  5'- cGGUCGUCgCCAGGGcCGAcg-GGGCCu -3'
miRNA:   3'- cUCGGCAGgGGUCCC-GCUcagCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 175779 0.66 0.690689
Target:  5'- aGGCgCGUCauuagCCGGGGCugcacgCGGGCCa -3'
miRNA:   3'- cUCG-GCAGg----GGUCCCGcuca--GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 172339 0.69 0.505898
Target:  5'- cGGCCGUCCUguggCAcacgucGGGCGGGU-GGGUCa -3'
miRNA:   3'- cUCGGCAGGG----GU------CCCGCUCAgCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 169519 0.66 0.644092
Target:  5'- -cGCCG-CCCCAGGuGCuGGUgccccagGGGCCc -3'
miRNA:   3'- cuCGGCaGGGGUCC-CGcUCAg------CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 169465 0.67 0.625353
Target:  5'- cGGGuUCGUCgCCAGGcGCGucGUCGuuGGCCa -3'
miRNA:   3'- -CUC-GGCAGgGGUCC-CGCu-CAGC--CCGG- -5'
14633 3' -64.2 NC_003521.1 + 169282 0.66 0.690689
Target:  5'- -cGUCGUCUUCGGcGGCGGGcUCGGugacgucgGCCg -3'
miRNA:   3'- cuCGGCAGGGGUC-CCGCUC-AGCC--------CGG- -5'
14633 3' -64.2 NC_003521.1 + 168408 0.69 0.514804
Target:  5'- -cGCCGUUgguggCUAGGGCGGGcggcaGGGCCg -3'
miRNA:   3'- cuCGGCAGg----GGUCCCGCUCag---CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 166246 0.68 0.560199
Target:  5'- -uGCCG-CCC---GGCGAG-CGGGCCg -3'
miRNA:   3'- cuCGGCaGGGgucCCGCUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 166065 0.66 0.644092
Target:  5'- uAGCCagcauccacUCCCgCAGGGCcauagcggGAG-CGGGCCg -3'
miRNA:   3'- cUCGGc--------AGGG-GUCCCG--------CUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 164986 0.7 0.462434
Target:  5'- -cGCCcaucuUCCCCgAGGGCGAGaUC-GGCCg -3'
miRNA:   3'- cuCGGc----AGGGG-UCCCGCUC-AGcCCGG- -5'
14633 3' -64.2 NC_003521.1 + 156887 0.68 0.532801
Target:  5'- cGGCCGcUgCCCgauggcacggGGGGCGA--CGGGCCg -3'
miRNA:   3'- cUCGGC-AgGGG----------UCCCGCUcaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 155488 0.66 0.672125
Target:  5'- -cGCCGg-CCUGcGGCGGGccgCGGGCCa -3'
miRNA:   3'- cuCGGCagGGGUcCCGCUCa--GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 155441 0.71 0.405083
Target:  5'- uGGCCGaCCCgCuGGGCGAGUCGcagcaGCCc -3'
miRNA:   3'- cUCGGCaGGG-GuCCCGCUCAGCc----CGG- -5'
14633 3' -64.2 NC_003521.1 + 151091 0.71 0.374388
Target:  5'- -cGCCGaCCCCu---CGGGUCGGGCCg -3'
miRNA:   3'- cuCGGCaGGGGucccGCUCAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 149417 0.66 0.694383
Target:  5'- cGGUCGcCCUguGGGCcgggauuugggucggGGGUCcGGGCCc -3'
miRNA:   3'- cUCGGCaGGGguCCCG---------------CUCAG-CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 142770 0.66 0.6628
Target:  5'- cAG-CGUCCgCGGcGGCGucGUCGGuGCCa -3'
miRNA:   3'- cUCgGCAGGgGUC-CCGCu-CAGCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 135765 0.66 0.672125
Target:  5'- uGGGaUCGcCCCUGGGGCugcucgcgcacGGG-CGGGCCg -3'
miRNA:   3'- -CUC-GGCaGGGGUCCCG-----------CUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 135363 0.66 0.690689
Target:  5'- -cGCCGUCUCCGcGGCG-GUuaucgcccgCGGGCg -3'
miRNA:   3'- cuCGGCAGGGGUcCCGCuCA---------GCCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.