miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 3' -64.2 NC_003521.1 + 124193 0.7 0.445603
Target:  5'- -uGCCGg-CUgGGGGUGAG-CGGGCCc -3'
miRNA:   3'- cuCGGCagGGgUCCCGCUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 70337 0.7 0.453976
Target:  5'- -cGCCGUCCagCAGGGCGuugagcuuGUCGGcgggguagaGCCg -3'
miRNA:   3'- cuCGGCAGGg-GUCCCGCu-------CAGCC---------CGG- -5'
14633 3' -64.2 NC_003521.1 + 177773 0.7 0.453976
Target:  5'- cGGUCGUCgCCAGGGcCGAcg-GGGCCu -3'
miRNA:   3'- cUCGGCAGgGGUCCC-GCUcagCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 186297 0.7 0.461584
Target:  5'- -cGCCGggCCCCAGcGGCGccgugcagauccuGGUCcacgccGGGCCg -3'
miRNA:   3'- cuCGGCa-GGGGUC-CCGC-------------UCAG------CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 164986 0.7 0.462434
Target:  5'- -cGCCcaucuUCCCCgAGGGCGAGaUC-GGCCg -3'
miRNA:   3'- cuCGGc----AGGGG-UCCCGCUC-AGcCCGG- -5'
14633 3' -64.2 NC_003521.1 + 194574 0.69 0.488289
Target:  5'- -cGCCa--CCgAGGGCGAcGUCGaGGCCg -3'
miRNA:   3'- cuCGGcagGGgUCCCGCU-CAGC-CCGG- -5'
14633 3' -64.2 NC_003521.1 + 223446 0.69 0.488289
Target:  5'- gGAGCgGUCCCUcu--CGAGUCuGGGCCg -3'
miRNA:   3'- -CUCGgCAGGGGucccGCUCAG-CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 211331 0.69 0.497058
Target:  5'- aGGCgGUCCCgCGGGcGCGAGUgguugGGGUCc -3'
miRNA:   3'- cUCGgCAGGG-GUCC-CGCUCAg----CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 172339 0.69 0.505898
Target:  5'- cGGCCGUCCUguggCAcacgucGGGCGGGU-GGGUCa -3'
miRNA:   3'- cUCGGCAGGG----GU------CCCGCUCAgCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 168408 0.69 0.514804
Target:  5'- -cGCCGUUgguggCUAGGGCGGGcggcaGGGCCg -3'
miRNA:   3'- cuCGGCAGg----GGUCCCGCUCag---CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 186487 0.69 0.518384
Target:  5'- cGAGUgG--CCCAGGGCGAGagccccgucgggaucUCGGGCg -3'
miRNA:   3'- -CUCGgCagGGGUCCCGCUC---------------AGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 156887 0.68 0.532801
Target:  5'- cGGCCGcUgCCCgauggcacggGGGGCGA--CGGGCCg -3'
miRNA:   3'- cUCGGC-AgGGG----------UCCCGCUcaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 87719 0.68 0.540974
Target:  5'- -uGCCGUCgcgcgcgCCCGGcGGCGuGgUGGGCCc -3'
miRNA:   3'- cuCGGCAG-------GGGUC-CCGCuCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 20909 0.68 0.541884
Target:  5'- gGAGCagGUCCCCGGGGaCcGGUcucaaucgcacgCGGGUCg -3'
miRNA:   3'- -CUCGg-CAGGGGUCCC-GcUCA------------GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 238414 0.68 0.550103
Target:  5'- gGGGCCGcUCCCAGugcucgcGGuCGAgGUCGGGCa -3'
miRNA:   3'- -CUCGGCaGGGGUC-------CC-GCU-CAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 38186 0.68 0.550103
Target:  5'- gGGGCCGcUCCCAGugcucgcGGuCGAgGUCGGGCa -3'
miRNA:   3'- -CUCGGCaGGGGUC-------CC-GCU-CAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 93947 0.68 0.550103
Target:  5'- -cGCCGucgucuggcuuccUCCUCuGGGCGGGagGGGCg -3'
miRNA:   3'- cuCGGC-------------AGGGGuCCCGCUCagCCCGg -5'
14633 3' -64.2 NC_003521.1 + 14751 0.68 0.560199
Target:  5'- cGGGCCGgCCgcggCCGGGGCGcGccuUCGuGGCCg -3'
miRNA:   3'- -CUCGGCaGG----GGUCCCGCuC---AGC-CCGG- -5'
14633 3' -64.2 NC_003521.1 + 20770 0.68 0.560199
Target:  5'- -uGCUGUCCuUCcuGGCGuuggcgcuGUCGGGCCa -3'
miRNA:   3'- cuCGGCAGG-GGucCCGCu-------CAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 166246 0.68 0.560199
Target:  5'- -uGCCG-CCC---GGCGAG-CGGGCCg -3'
miRNA:   3'- cuCGGCaGGGgucCCGCUCaGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.