miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 3' -64.2 NC_003521.1 + 135363 0.66 0.690689
Target:  5'- -cGCCGUCUCCGcGGCG-GUuaucgcccgCGGGCg -3'
miRNA:   3'- cuCGGCAGGGGUcCCGCuCA---------GCCCGg -5'
14633 3' -64.2 NC_003521.1 + 118533 0.66 0.699912
Target:  5'- aAGCCGggauUCCCCAc-GCGGcUUGGGCCg -3'
miRNA:   3'- cUCGGC----AGGGGUccCGCUcAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 169282 0.66 0.690689
Target:  5'- -cGUCGUCUUCGGcGGCGGGcUCGGugacgucgGCCg -3'
miRNA:   3'- cuCGGCAGGGGUC-CCGCUC-AGCC--------CGG- -5'
14633 3' -64.2 NC_003521.1 + 175779 0.66 0.690689
Target:  5'- aGGCgCGUCauuagCCGGGGCugcacgCGGGCCa -3'
miRNA:   3'- cUCG-GCAGg----GGUCCCGcuca--GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 113341 0.66 0.681424
Target:  5'- -cGCCGgggggCuUCCAGGGgGA--CGGGCCg -3'
miRNA:   3'- cuCGGCa----G-GGGUCCCgCUcaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 149417 0.66 0.694383
Target:  5'- cGGUCGcCCUguGGGCcgggauuugggucggGGGUCcGGGCCc -3'
miRNA:   3'- cUCGGCaGGGguCCCG---------------CUCAG-CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 215030 0.66 0.672125
Target:  5'- aGAGCCGUCUCguGaaaguGCGAca-GGGCCa -3'
miRNA:   3'- -CUCGGCAGGGguCc----CGCUcagCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 113977 0.67 0.606631
Target:  5'- cGAGCUGUUCCUGGcGGUGcAGUucgUGGGCg -3'
miRNA:   3'- -CUCGGCAGGGGUC-CCGC-UCA---GCCCGg -5'
14633 3' -64.2 NC_003521.1 + 238559 0.67 0.634724
Target:  5'- uGGCCGUCCUgGGGGC-AGUa--GCCg -3'
miRNA:   3'- cUCGGCAGGGgUCCCGcUCAgccCGG- -5'
14633 3' -64.2 NC_003521.1 + 198772 0.67 0.587973
Target:  5'- -cGCCG-CUCguGGGCGAGgUGGGUa -3'
miRNA:   3'- cuCGGCaGGGguCCCGCUCaGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 169465 0.67 0.625353
Target:  5'- cGGGuUCGUCgCCAGGcGCGucGUCGuuGGCCa -3'
miRNA:   3'- -CUC-GGCAGgGGUCC-CGCu-CAGC--CCGG- -5'
14633 3' -64.2 NC_003521.1 + 44280 0.67 0.634724
Target:  5'- uGGGUCGgcuuucUCCCCcgggagcuGGGCGGGUUGcuguGGCCg -3'
miRNA:   3'- -CUCGGC------AGGGGu-------CCCGCUCAGC----CCGG- -5'
14633 3' -64.2 NC_003521.1 + 125746 0.67 0.597291
Target:  5'- aGGGCaggGUUUCU-GGGCGAcGUCGGGCUu -3'
miRNA:   3'- -CUCGg--CAGGGGuCCCGCU-CAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 6755 0.67 0.606631
Target:  5'- -cGCCGagUCCCAGGGCGuccauGGCCa -3'
miRNA:   3'- cuCGGCa-GGGGUCCCGCucagcCCGG- -5'
14633 3' -64.2 NC_003521.1 + 88473 0.67 0.587973
Target:  5'- cGGCCGgCCCCAGagcaGCGucGGcgCGGGCCc -3'
miRNA:   3'- cUCGGCaGGGGUCc---CGC--UCa-GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 106529 0.67 0.587973
Target:  5'- uGGCgGUUCCCAGaagcgcugaaaGcGCGAGU-GGGCCg -3'
miRNA:   3'- cUCGgCAGGGGUC-----------C-CGCUCAgCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 112261 0.67 0.587973
Target:  5'- -cGCCGU-CCCAGGG-GAGUCacGGCg -3'
miRNA:   3'- cuCGGCAgGGGUCCCgCUCAGc-CCGg -5'
14633 3' -64.2 NC_003521.1 + 116714 0.67 0.587973
Target:  5'- -cGCCGUCCacuuccaCGGcGGUcccgGAGUCGGcGCCc -3'
miRNA:   3'- cuCGGCAGGg------GUC-CCG----CUCAGCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 130280 0.67 0.624416
Target:  5'- -cGCCcUCUCCGgcuaccuGGGCGAGgccgCGGcGCCg -3'
miRNA:   3'- cuCGGcAGGGGU-------CCCGCUCa---GCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 101956 0.67 0.634724
Target:  5'- aGGCUGUUCUCGGGGUgcGAGaUgGGGUCc -3'
miRNA:   3'- cUCGGCAGGGGUCCCG--CUC-AgCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.