Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14633 | 5' | -52.1 | NC_003521.1 | + | 44460 | 0.68 | 0.987037 |
Target: 5'- gGCGGUgGAagugUUCGCCGAGAAccUGUCc-- -3' miRNA: 3'- -UGCCGgCU----GAGCGGCUUUU--ACAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 103389 | 0.67 | 0.989879 |
Target: 5'- gGCaGCCGcgcguGCUCGCgGAAGGUGUUg-- -3' miRNA: 3'- -UGcCGGC-----UGAGCGgCUUUUACAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 27570 | 0.67 | 0.990987 |
Target: 5'- gGCGGUCGACgCGUCGGAcuccgauGcgGUCUg- -3' miRNA: 3'- -UGCCGGCUGaGCGGCUU-------UuaCAGAac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 197385 | 0.67 | 0.991104 |
Target: 5'- -aGGCUcuGGCUCGCCGcccgggacuGGGUGUCUg- -3' miRNA: 3'- ugCCGG--CUGAGCGGCu--------UUUACAGAac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 211585 | 0.67 | 0.99156 |
Target: 5'- cGCGGCgGugUCcCCGGAgacguccugcagcggGAUGUCUUc -3' miRNA: 3'- -UGCCGgCugAGcGGCUU---------------UUACAGAAc -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 43867 | 0.67 | 0.992208 |
Target: 5'- cCGGCCGGCUC-CCGGGcc-GUCg-- -3' miRNA: 3'- uGCCGGCUGAGcGGCUUuuaCAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 120795 | 0.67 | 0.992208 |
Target: 5'- cACGGCCGGgUUGCUGcugucGAUGUCc-- -3' miRNA: 3'- -UGCCGGCUgAGCGGCuu---UUACAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 182179 | 0.67 | 0.992208 |
Target: 5'- gACGGCCGGCgCGUgGGGAuucagacacuugGUGcUCUUGu -3' miRNA: 3'- -UGCCGGCUGaGCGgCUUU------------UAC-AGAAC- -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 170294 | 0.67 | 0.992209 |
Target: 5'- uCGGCCGGCcgaGCgCGAGGcgGUCa-- -3' miRNA: 3'- uGCCGGCUGag-CG-GCUUUuaCAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 58952 | 0.67 | 0.992209 |
Target: 5'- uCGGCgaGCUCGCCGAGGG-GUCg-- -3' miRNA: 3'- uGCCGgcUGAGCGGCUUUUaCAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 78212 | 0.67 | 0.993202 |
Target: 5'- cGCGGC--GCUCGUCGGAGGcUGUCg-- -3' miRNA: 3'- -UGCCGgcUGAGCGGCUUUU-ACAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 74580 | 0.67 | 0.993202 |
Target: 5'- cACGGCCcGCUCGCCGGGc-------- -3' miRNA: 3'- -UGCCGGcUGAGCGGCUUuuacagaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 125604 | 0.66 | 0.994091 |
Target: 5'- uGCGuGuCCGugUCGCCGcgGAUGcagucCUUGg -3' miRNA: 3'- -UGC-C-GGCugAGCGGCuuUUACa----GAAC- -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 70107 | 0.66 | 0.994091 |
Target: 5'- cUGGCCGGCgugcCGCCGAAGGgccgCUa- -3' miRNA: 3'- uGCCGGCUGa---GCGGCUUUUaca-GAac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 23844 | 0.66 | 0.994091 |
Target: 5'- -aGGCCGACcUGCUGGcgcuGUGUCUc- -3' miRNA: 3'- ugCCGGCUGaGCGGCUuu--UACAGAac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 117483 | 0.66 | 0.994884 |
Target: 5'- cACGGCCG-CggCGCUGggGccGUCg-- -3' miRNA: 3'- -UGCCGGCuGa-GCGGCuuUuaCAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 120592 | 0.66 | 0.994884 |
Target: 5'- cGCGGCCGccgGCUCcuGCCGguAGcGUCUg- -3' miRNA: 3'- -UGCCGGC---UGAG--CGGCuuUUaCAGAac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 206758 | 0.66 | 0.995588 |
Target: 5'- uGCcGCCGACuaUCGCCGAuuAUcGUCg-- -3' miRNA: 3'- -UGcCGGCUG--AGCGGCUuuUA-CAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 52759 | 0.66 | 0.996211 |
Target: 5'- -aGGCCGcACUCGUuaaccaggaUGGAGAUGUCc-- -3' miRNA: 3'- ugCCGGC-UGAGCG---------GCUUUUACAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 234453 | 0.66 | 0.996211 |
Target: 5'- -gGGCCGACcucCGCUcuGAGUGUCUc- -3' miRNA: 3'- ugCCGGCUGa--GCGGcuUUUACAGAac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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