Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 14633 | 5' | -52.1 | NC_003521.1 | + | 140213 | 0.71 | 0.928614 |
|
Target: 5'- gGCGGCCGAgUCGCCGugcagcauGAUGgcggCUc- -3' miRNA: 3'- -UGCCGGCUgAGCGGCuu------UUACa---GAac -5' |
|||||||
| 14633 | 5' | -52.1 | NC_003521.1 | + | 119355 | 0.71 | 0.938578 |
|
Target: 5'- cCGGCCuccaugGACaCGCCGggGAUGUCc-- -3' miRNA: 3'- uGCCGG------CUGaGCGGCuuUUACAGaac -5' |
|||||||
| 14633 | 5' | -52.1 | NC_003521.1 | + | 55769 | 0.71 | 0.943207 |
|
Target: 5'- cGCGGCCGGCgguacaGCuCGAAGAUGaaCUUGc -3' miRNA: 3'- -UGCCGGCUGag----CG-GCUUUUACa-GAAC- -5' |
|||||||
| 14633 | 5' | -52.1 | NC_003521.1 | + | 118216 | 0.71 | 0.942755 |
|
Target: 5'- cGCGGCCGccGCcgUCGCCGggGuggucaaugccucGUGUCgggUGg -3' miRNA: 3'- -UGCCGGC--UG--AGCGGCuuU-------------UACAGa--AC- -5' |
|||||||
| 14633 | 5' | -52.1 | NC_003521.1 | + | 172290 | 0.71 | 0.938578 |
|
Target: 5'- gGCGGCCGcuGC-CGCCGuccGGUGUCggUGg -3' miRNA: 3'- -UGCCGGC--UGaGCGGCuu-UUACAGa-AC- -5' |
|||||||
| 14633 | 5' | -52.1 | NC_003521.1 | + | 165949 | 0.71 | 0.923277 |
|
Target: 5'- -aGGUCGggguGCUCGCgGAAGAUGUCg-- -3' miRNA: 3'- ugCCGGC----UGAGCGgCUUUUACAGaac -5' |
|||||||
| 14633 | 5' | -52.1 | NC_003521.1 | + | 161554 | 0.72 | 0.88633 |
|
Target: 5'- gACGGggugcucuucuUCGACUCGCCGGAGaacGUGUCg-- -3' miRNA: 3'- -UGCC-----------GGCUGAGCGGCUUU---UACAGaac -5' |
|||||||
| 14633 | 5' | -52.1 | NC_003521.1 | + | 75830 | 0.73 | 0.879374 |
|
Target: 5'- uGCGGCCGAuCUCGCCcucggGAAGAUGg---- -3' miRNA: 3'- -UGCCGGCU-GAGCGG-----CUUUUACagaac -5' |
|||||||
| 14633 | 5' | -52.1 | NC_003521.1 | + | 229099 | 1.09 | 0.010905 |
|
Target: 5'- gACGGCCGACUCGCCGAAAAUGUCUUGa -3' miRNA: 3'- -UGCCGGCUGAGCGGCUUUUACAGAAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home