miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14634 3' -49.5 NC_003521.1 + 87738 0.7 0.994252
Target:  5'- uGCCAgacgaagC-CCGAGACCag--CUGCGGa -3'
miRNA:   3'- gUGGUa------GaGGCUCUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 83878 0.7 0.992392
Target:  5'- gACCcaGUCUUCGGGugCa--UCUGCGGg -3'
miRNA:   3'- gUGG--UAGAGGCUCugGaaaAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 132476 0.74 0.947679
Target:  5'- aGCCGUCUUCgGAGACCgccgUCggcGCGGa -3'
miRNA:   3'- gUGGUAGAGG-CUCUGGaaa-AGa--UGCC- -5'
14634 3' -49.5 NC_003521.1 + 83636 0.74 0.928524
Target:  5'- -cCCAcCUCCGAGACCU--UCUGCa- -3'
miRNA:   3'- guGGUaGAGGCUCUGGAaaAGAUGcc -5'
14634 3' -49.5 NC_003521.1 + 114414 0.75 0.905524
Target:  5'- cCGCCAUCgcgcagggCCGAGACCUgug--GCGGc -3'
miRNA:   3'- -GUGGUAGa-------GGCUCUGGAaaagaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 208587 0.68 0.998421
Target:  5'- gCGCUAUCUCaCGGcGACUgagUUUGCGGc -3'
miRNA:   3'- -GUGGUAGAG-GCU-CUGGaaaAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 148781 0.68 0.998685
Target:  5'- gGCgGUCgcgCCGAGgaGCCgcggCUGCGGa -3'
miRNA:   3'- gUGgUAGa--GGCUC--UGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 111457 0.66 0.999803
Target:  5'- --aCAUCUaCCGucGCCUg--CUACGGg -3'
miRNA:   3'- gugGUAGA-GGCucUGGAaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 94645 0.66 0.999803
Target:  5'- uGCCAgcucgaUCCGGGACCgccguaGCGGg -3'
miRNA:   3'- gUGGUag----AGGCUCUGGaaaagaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 227161 0.66 0.99975
Target:  5'- cCACCcUCUCCGAG-CCUcUUCUcccGCc- -3'
miRNA:   3'- -GUGGuAGAGGCUCuGGAaAAGA---UGcc -5'
14634 3' -49.5 NC_003521.1 + 217628 0.66 0.99975
Target:  5'- cCGCCAUCUCCucGGCgUggUCggggggcaugGCGGg -3'
miRNA:   3'- -GUGGUAGAGGcuCUGgAaaAGa---------UGCC- -5'
14634 3' -49.5 NC_003521.1 + 219827 0.67 0.999608
Target:  5'- gGCC--CUCCGAGACCcggaUCcagUGCGGg -3'
miRNA:   3'- gUGGuaGAGGCUCUGGaaa-AG---AUGCC- -5'
14634 3' -49.5 NC_003521.1 + 83594 0.66 0.999686
Target:  5'- aGCCG-CUCCuGGGCCUUgaugCaGCGGa -3'
miRNA:   3'- gUGGUaGAGGcUCUGGAAaa--GaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 29453 0.67 0.999608
Target:  5'- gGCCAguucaugaUCCGcGACCggcugCUGCGGg -3'
miRNA:   3'- gUGGUag------AGGCuCUGGaaaa-GAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 53490 0.67 0.999514
Target:  5'- -uUCAUCacgUCGAGGCCgcugCUGCGGc -3'
miRNA:   3'- guGGUAGa--GGCUCUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 65519 0.67 0.999492
Target:  5'- gCGCUGUCagcugggcgacgCCGAGACCgugUUC-ACGGg -3'
miRNA:   3'- -GUGGUAGa-----------GGCUCUGGaa-AAGaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 145222 0.67 0.9994
Target:  5'- cCACCAaguUCUaCGAGGCCUUcgUgaGCGGc -3'
miRNA:   3'- -GUGGU---AGAgGCUCUGGAAa-AgaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 171599 0.67 0.999102
Target:  5'- -cCCGUCUCUcaGAGACCaccacagcCUGCGGu -3'
miRNA:   3'- guGGUAGAGG--CUCUGGaaaa----GAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 135362 0.67 0.999102
Target:  5'- gCGCCGUCUCCGcGGCggUUaUCgcccGCGGg -3'
miRNA:   3'- -GUGGUAGAGGCuCUGgaAA-AGa---UGCC- -5'
14634 3' -49.5 NC_003521.1 + 232388 0.68 0.99891
Target:  5'- cCACCGUCUCgCGcuGGCUgcgcCUGCGGc -3'
miRNA:   3'- -GUGGUAGAG-GCu-CUGGaaaaGAUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.