Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14634 | 3' | -49.5 | NC_003521.1 | + | 104909 | 0.67 | 0.999448 |
Target: 5'- gGCCGUggCCGAGGCCggcacaaagACGGg -3' miRNA: 3'- gUGGUAgaGGCUCUGGaaaaga---UGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 106357 | 0.68 | 0.998421 |
Target: 5'- gCACCAaacUCaUCCGGGugCUcUUCUACc- -3' miRNA: 3'- -GUGGU---AG-AGGCUCugGAaAAGAUGcc -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 135010 | 0.69 | 0.997348 |
Target: 5'- cCACCAUCUggcugccgggcaCCGuGGCCUgcgUC-ACGGu -3' miRNA: 3'- -GUGGUAGA------------GGCuCUGGAaa-AGaUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 100770 | 0.66 | 0.999821 |
Target: 5'- gCACUcgUgcaaCGAGGCCUUccugccgccauggccUUCUGCGGc -3' miRNA: 3'- -GUGGuaGag--GCUCUGGAA---------------AAGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 226924 | 0.67 | 0.9994 |
Target: 5'- -uCgGUCUCguCGAGACCg---CUACGGu -3' miRNA: 3'- guGgUAGAG--GCUCUGGaaaaGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 48232 | 0.69 | 0.997348 |
Target: 5'- -uCCGUCgacgCCGAGcaGCCUgcgUUCcGCGGg -3' miRNA: 3'- guGGUAGa---GGCUC--UGGAa--AAGaUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 1152 | 0.66 | 0.999803 |
Target: 5'- uGCCGUCcCCGGGagccacggcGCCgc--CUACGGg -3' miRNA: 3'- gUGGUAGaGGCUC---------UGGaaaaGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 40314 | 0.69 | 0.996877 |
Target: 5'- gCACaCA-CUCCGAuccGGCCUccgCUGCGGg -3' miRNA: 3'- -GUG-GUaGAGGCU---CUGGAaaaGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 30858 | 0.66 | 0.999679 |
Target: 5'- gGCCGuccgcggcaacuUCUCCGAacCCUUUccccgggUCUACGGu -3' miRNA: 3'- gUGGU------------AGAGGCUcuGGAAA-------AGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 11565 | 0.66 | 0.999845 |
Target: 5'- gCGCCGUCgugcgCCG-GAC----UCUGCGGg -3' miRNA: 3'- -GUGGUAGa----GGCuCUGgaaaAGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 1380 | 0.69 | 0.996339 |
Target: 5'- cCGCUGUCcCCGAGcCCgcgcugCUGCGGa -3' miRNA: 3'- -GUGGUAGaGGCUCuGGaaaa--GAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 124099 | 0.68 | 0.998392 |
Target: 5'- gCGCCGaCUCCGGGACCgccguggaaguggACGGc -3' miRNA: 3'- -GUGGUaGAGGCUCUGGaaaaga-------UGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 27510 | 0.68 | 0.997907 |
Target: 5'- gCGCCAUCcucuucaucaugaugUCCGucACCU--UCUACGGc -3' miRNA: 3'- -GUGGUAG---------------AGGCucUGGAaaAGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 148781 | 0.68 | 0.998685 |
Target: 5'- gGCgGUCgcgCCGAGgaGCCgcggCUGCGGa -3' miRNA: 3'- gUGgUAGa--GGCUC--UGGaaaaGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 208587 | 0.68 | 0.998421 |
Target: 5'- gCGCUAUCUCaCGGcGACUgagUUUGCGGc -3' miRNA: 3'- -GUGGUAGAG-GCU-CUGGaaaAGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 106377 | 0.68 | 0.998421 |
Target: 5'- cCGCCAUCUCCGccGCCUccUCcgucguCGGg -3' miRNA: 3'- -GUGGUAGAGGCucUGGAaaAGau----GCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 112000 | 0.7 | 0.994252 |
Target: 5'- uCGCCGUCUacgagccccaCCGGGAaaacgUUCUGCGGu -3' miRNA: 3'- -GUGGUAGA----------GGCUCUggaa-AAGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 227161 | 0.66 | 0.99975 |
Target: 5'- cCACCcUCUCCGAG-CCUcUUCUcccGCc- -3' miRNA: 3'- -GUGGuAGAGGCUCuGGAaAAGA---UGcc -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 94645 | 0.66 | 0.999803 |
Target: 5'- uGCCAgcucgaUCCGGGACCgccguaGCGGg -3' miRNA: 3'- gUGGUag----AGGCUCUGGaaaagaUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 111457 | 0.66 | 0.999803 |
Target: 5'- --aCAUCUaCCGucGCCUg--CUACGGg -3' miRNA: 3'- gugGUAGA-GGCucUGGAaaaGAUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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