miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14634 3' -49.5 NC_003521.1 + 138370 0.74 0.943248
Target:  5'- aCACgGUCUUCGAGAUCUgccgcggcCUGCGGc -3'
miRNA:   3'- -GUGgUAGAGGCUCUGGAaaa-----GAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 124099 0.68 0.998392
Target:  5'- gCGCCGaCUCCGGGACCgccguggaaguggACGGc -3'
miRNA:   3'- -GUGGUaGAGGCUCUGGaaaaga-------UGCC- -5'
14634 3' -49.5 NC_003521.1 + 22502 0.68 0.99891
Target:  5'- gCACCA---CCGuGGCCacgggUUUCUGCGGu -3'
miRNA:   3'- -GUGGUagaGGCuCUGGa----AAAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 94293 0.66 0.999879
Target:  5'- cCGCCGgagggacCCGGGuggaGCCgccgUUUCUGCGGg -3'
miRNA:   3'- -GUGGUaga----GGCUC----UGGa---AAAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 17478 0.7 0.990082
Target:  5'- gGCCGcCgCCGAGGCCUggggcaccuaUCUGCGGc -3'
miRNA:   3'- gUGGUaGaGGCUCUGGAaa--------AGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 88323 0.7 0.990082
Target:  5'- -cCCAUCcCCGAGGCCUa-UCUGCa- -3'
miRNA:   3'- guGGUAGaGGCUCUGGAaaAGAUGcc -5'
14634 3' -49.5 NC_003521.1 + 84676 0.7 0.992392
Target:  5'- cCACCGUCgucggaaucgUCCGAGACgacggggUUUCUgACGGg -3'
miRNA:   3'- -GUGGUAG----------AGGCUCUGga-----AAAGA-UGCC- -5'
14634 3' -49.5 NC_003521.1 + 138115 0.7 0.993374
Target:  5'- gCGCCGucuUCUCCGAGACCUg----GCa- -3'
miRNA:   3'- -GUGGU---AGAGGCUCUGGAaaagaUGcc -5'
14634 3' -49.5 NC_003521.1 + 111454 0.69 0.996339
Target:  5'- gGCCAUCUUCGGcACCU--UCUGCa- -3'
miRNA:   3'- gUGGUAGAGGCUcUGGAaaAGAUGcc -5'
14634 3' -49.5 NC_003521.1 + 27510 0.68 0.997907
Target:  5'- gCGCCAUCcucuucaucaugaugUCCGucACCU--UCUACGGc -3'
miRNA:   3'- -GUGGUAG---------------AGGCucUGGAaaAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 40314 0.69 0.996877
Target:  5'- gCACaCA-CUCCGAuccGGCCUccgCUGCGGg -3'
miRNA:   3'- -GUG-GUaGAGGCU---CUGGAaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 161785 0.69 0.995321
Target:  5'- aCGCCAUgUCUGucacgccggccaccaAGACCUccaUCUACGGc -3'
miRNA:   3'- -GUGGUAgAGGC---------------UCUGGAaa-AGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 115185 0.72 0.969463
Target:  5'- gACCAUCgaCGAGuACCUg--CUGCGGg -3'
miRNA:   3'- gUGGUAGagGCUC-UGGAaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 48232 0.69 0.997348
Target:  5'- -uCCGUCgacgCCGAGcaGCCUgcgUUCcGCGGg -3'
miRNA:   3'- guGGUAGa---GGCUC--UGGAa--AAGaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 106211 0.72 0.977491
Target:  5'- gGCCAUCUCCGAGugC------GCGGc -3'
miRNA:   3'- gUGGUAGAGGCUCugGaaaagaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 190209 0.7 0.993374
Target:  5'- gGCCGUCUCaCGGGACCUcccugacUCagAUGGg -3'
miRNA:   3'- gUGGUAGAG-GCUCUGGAaa-----AGa-UGCC- -5'
14634 3' -49.5 NC_003521.1 + 135010 0.69 0.997348
Target:  5'- cCACCAUCUggcugccgggcaCCGuGGCCUgcgUC-ACGGu -3'
miRNA:   3'- -GUGGUAGA------------GGCuCUGGAaa-AGaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 106357 0.68 0.998421
Target:  5'- gCACCAaacUCaUCCGGGugCUcUUCUACc- -3'
miRNA:   3'- -GUGGU---AG-AGGCUCugGAaAAGAUGcc -5'
14634 3' -49.5 NC_003521.1 + 145565 0.71 0.981901
Target:  5'- aAUCAUCUUCGccGGACCUccccggcUCUGCGGa -3'
miRNA:   3'- gUGGUAGAGGC--UCUGGAaa-----AGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 30168 0.7 0.992392
Target:  5'- gGCCAUgCUCCGcgucuauguggGGAUCU--UCUGCGGu -3'
miRNA:   3'- gUGGUA-GAGGC-----------UCUGGAaaAGAUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.