miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14634 3' -49.5 NC_003521.1 + 87738 0.7 0.994252
Target:  5'- uGCCAgacgaagC-CCGAGACCag--CUGCGGa -3'
miRNA:   3'- gUGGUa------GaGGCUCUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 88323 0.7 0.990082
Target:  5'- -cCCAUCcCCGAGGCCUa-UCUGCa- -3'
miRNA:   3'- guGGUAGaGGCUCUGGAaaAGAUGcc -5'
14634 3' -49.5 NC_003521.1 + 94293 0.66 0.999879
Target:  5'- cCGCCGgagggacCCGGGuggaGCCgccgUUUCUGCGGg -3'
miRNA:   3'- -GUGGUaga----GGCUC----UGGa---AAAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 94645 0.66 0.999803
Target:  5'- uGCCAgcucgaUCCGGGACCgccguaGCGGg -3'
miRNA:   3'- gUGGUag----AGGCUCUGGaaaagaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 100770 0.66 0.999821
Target:  5'- gCACUcgUgcaaCGAGGCCUUccugccgccauggccUUCUGCGGc -3'
miRNA:   3'- -GUGGuaGag--GCUCUGGAA---------------AAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 104909 0.67 0.999448
Target:  5'- gGCCGUggCCGAGGCCggcacaaagACGGg -3'
miRNA:   3'- gUGGUAgaGGCUCUGGaaaaga---UGCC- -5'
14634 3' -49.5 NC_003521.1 + 106211 0.72 0.977491
Target:  5'- gGCCAUCUCCGAGugC------GCGGc -3'
miRNA:   3'- gUGGUAGAGGCUCugGaaaagaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 106357 0.68 0.998421
Target:  5'- gCACCAaacUCaUCCGGGugCUcUUCUACc- -3'
miRNA:   3'- -GUGGU---AG-AGGCUCugGAaAAGAUGcc -5'
14634 3' -49.5 NC_003521.1 + 106377 0.68 0.998421
Target:  5'- cCGCCAUCUCCGccGCCUccUCcgucguCGGg -3'
miRNA:   3'- -GUGGUAGAGGCucUGGAaaAGau----GCC- -5'
14634 3' -49.5 NC_003521.1 + 111454 0.69 0.996339
Target:  5'- gGCCAUCUUCGGcACCU--UCUGCa- -3'
miRNA:   3'- gUGGUAGAGGCUcUGGAaaAGAUGcc -5'
14634 3' -49.5 NC_003521.1 + 111457 0.66 0.999803
Target:  5'- --aCAUCUaCCGucGCCUg--CUACGGg -3'
miRNA:   3'- gugGUAGA-GGCucUGGAaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 112000 0.7 0.994252
Target:  5'- uCGCCGUCUacgagccccaCCGGGAaaacgUUCUGCGGu -3'
miRNA:   3'- -GUGGUAGA----------GGCUCUggaa-AAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 114414 0.75 0.905524
Target:  5'- cCGCCAUCgcgcagggCCGAGACCUgug--GCGGc -3'
miRNA:   3'- -GUGGUAGa-------GGCUCUGGAaaagaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 115185 0.72 0.969463
Target:  5'- gACCAUCgaCGAGuACCUg--CUGCGGg -3'
miRNA:   3'- gUGGUAGagGCUC-UGGAaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 123208 0.69 0.996339
Target:  5'- aCACCggGUCgCUGGGACCcucgCUGCGGu -3'
miRNA:   3'- -GUGG--UAGaGGCUCUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 124099 0.68 0.998392
Target:  5'- gCGCCGaCUCCGGGACCgccguggaaguggACGGc -3'
miRNA:   3'- -GUGGUaGAGGCUCUGGaaaaga-------UGCC- -5'
14634 3' -49.5 NC_003521.1 + 129653 0.66 0.99975
Target:  5'- gCGCCGUCgCCGGGgcgGCCgcgcuaUGCGGa -3'
miRNA:   3'- -GUGGUAGaGGCUC---UGGaaaag-AUGCC- -5'
14634 3' -49.5 NC_003521.1 + 132476 0.74 0.947679
Target:  5'- aGCCGUCUUCgGAGACCgccgUCggcGCGGa -3'
miRNA:   3'- gUGGUAGAGG-CUCUGGaaa-AGa--UGCC- -5'
14634 3' -49.5 NC_003521.1 + 135010 0.69 0.997348
Target:  5'- cCACCAUCUggcugccgggcaCCGuGGCCUgcgUC-ACGGu -3'
miRNA:   3'- -GUGGUAGA------------GGCuCUGGAaa-AGaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 135362 0.67 0.999102
Target:  5'- gCGCCGUCUCCGcGGCggUUaUCgcccGCGGg -3'
miRNA:   3'- -GUGGUAGAGGCuCUGgaAA-AGa---UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.