Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14635 | 3' | -57.1 | NC_003521.1 | + | 236505 | 0.67 | 0.894836 |
Target: 5'- aGGCAuGGACGG-UCGAgC-CCCCGCc -3' miRNA: 3'- cUUGUcCCUGCCaAGCUgGaGGGGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 235152 | 0.66 | 0.938574 |
Target: 5'- cGGACGGGcgccCGuGUcUCGACC-CCCCACc -3' miRNA: 3'- -CUUGUCCcu--GC-CA-AGCUGGaGGGGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 233876 | 1.09 | 0.003555 |
Target: 5'- gGAACAGGGACGGUUCGACCUCCCCACg -3' miRNA: 3'- -CUUGUCCCUGCCAAGCUGGAGGGGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 228916 | 0.66 | 0.938574 |
Target: 5'- ---gGGGGAC---UCGAUCUCCuCCACg -3' miRNA: 3'- cuugUCCCUGccaAGCUGGAGG-GGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 223494 | 0.71 | 0.723056 |
Target: 5'- gGAGguGGGGCGGaUCGGCgaCUUCUCACa -3' miRNA: 3'- -CUUguCCCUGCCaAGCUG--GAGGGGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 217611 | 0.66 | 0.928961 |
Target: 5'- cAGCAGGGGCGucUCGGCCgccaucUCCUCGg -3' miRNA: 3'- cUUGUCCCUGCcaAGCUGG------AGGGGUg -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 215334 | 0.66 | 0.933396 |
Target: 5'- aGAGCAgcaccgacaccuuGGGugGGUggGACUUCUCgGCg -3' miRNA: 3'- -CUUGU-------------CCCugCCAagCUGGAGGGgUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 202427 | 0.66 | 0.947309 |
Target: 5'- --uCGGGGaACGGa-CGGCCggCCCUACg -3' miRNA: 3'- cuuGUCCC-UGCCaaGCUGGa-GGGGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 195854 | 0.66 | 0.947309 |
Target: 5'- cGGCAGGGuucggggaucGCGGUgUCGccgcccuuCCUCCCCGu -3' miRNA: 3'- cUUGUCCC----------UGCCA-AGCu-------GGAGGGGUg -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 187835 | 0.67 | 0.918463 |
Target: 5'- -cGCAGGGcguuGCGGa-CGGCCUUCCuCACc -3' miRNA: 3'- cuUGUCCC----UGCCaaGCUGGAGGG-GUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 186660 | 0.66 | 0.933878 |
Target: 5'- cGGCGGuGGCGGaggcggCGGCCUCUCCAa -3' miRNA: 3'- cUUGUCcCUGCCaa----GCUGGAGGGGUg -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 173638 | 0.66 | 0.928961 |
Target: 5'- uGAGCAGGGuguUGGUUCGGgCggCUgCGCg -3' miRNA: 3'- -CUUGUCCCu--GCCAAGCUgGa-GGgGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 167833 | 0.73 | 0.635461 |
Target: 5'- aGAGCAGGaGCGGccaGGCC-CCCCGCg -3' miRNA: 3'- -CUUGUCCcUGCCaagCUGGaGGGGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 167411 | 0.67 | 0.887735 |
Target: 5'- ---uGGGGGCGcUUCGGcugcuguCCUCCCCAUc -3' miRNA: 3'- cuugUCCCUGCcAAGCU-------GGAGGGGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 152468 | 0.69 | 0.813235 |
Target: 5'- -cAUAGGcGGCGGccaCGAUCUCCCCGa -3' miRNA: 3'- cuUGUCC-CUGCCaa-GCUGGAGGGGUg -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 148625 | 0.69 | 0.813235 |
Target: 5'- cGAGCAGGGGCGGgggaggggaGGCCagggcaucgCCCCGa -3' miRNA: 3'- -CUUGUCCCUGCCaag------CUGGa--------GGGGUg -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 139509 | 0.69 | 0.821544 |
Target: 5'- -cGCAGGaGACGGUgcagguguucaUCGACCUgCgCACc -3' miRNA: 3'- cuUGUCC-CUGCCA-----------AGCUGGAgGgGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 133229 | 0.66 | 0.943051 |
Target: 5'- --uCAGGGGCGauggcggucgaGgaCGACCUCCuCUACg -3' miRNA: 3'- cuuGUCCCUGC-----------CaaGCUGGAGG-GGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 129184 | 0.69 | 0.8353 |
Target: 5'- -uGCGGcGGuuuggguuucgccgGCGGUUCGACCUCgUCGCc -3' miRNA: 3'- cuUGUC-CC--------------UGCCAAGCUGGAGgGGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 123458 | 0.67 | 0.918463 |
Target: 5'- uAGCGGGGACcgcgGGUuggCGACUggCCCCGa -3' miRNA: 3'- cUUGUCCCUG----CCAa--GCUGGa-GGGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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