miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14636 3' -57 NC_003521.1 + 102303 0.7 0.776037
Target:  5'- aGUCGAGGUgCGccGGACccaGCGGGCCCGu -3'
miRNA:   3'- -CAGCUCUAgGU--CCUGc--UGCCUGGGUu -5'
14636 3' -57 NC_003521.1 + 103050 0.66 0.922862
Target:  5'- --aGAGuUCCAGGGCGugACGGAagagcuCCCAGa -3'
miRNA:   3'- cagCUCuAGGUCCUGC--UGCCU------GGGUU- -5'
14636 3' -57 NC_003521.1 + 103225 0.67 0.911786
Target:  5'- gGUCGccggCCAGG-CGGCGG-CCCAAg -3'
miRNA:   3'- -CAGCucuaGGUCCuGCUGCCuGGGUU- -5'
14636 3' -57 NC_003521.1 + 111828 0.66 0.933046
Target:  5'- -gCGAGAUCUGGaGCGugGuGCCCAGc -3'
miRNA:   3'- caGCUCUAGGUCcUGCugCcUGGGUU- -5'
14636 3' -57 NC_003521.1 + 113343 0.71 0.700795
Target:  5'- -cCGGGGggcuUCCAGGGgGACGGGCCgGGg -3'
miRNA:   3'- caGCUCU----AGGUCCUgCUGCCUGGgUU- -5'
14636 3' -57 NC_003521.1 + 122050 0.68 0.85133
Target:  5'- -gCGAGAUgCAGGGCGACGuGCgCAc -3'
miRNA:   3'- caGCUCUAgGUCCUGCUGCcUGgGUu -5'
14636 3' -57 NC_003521.1 + 122725 0.71 0.729644
Target:  5'- gGUCGuGGUCguGGGCGACGGcGCCg-- -3'
miRNA:   3'- -CAGCuCUAGguCCUGCUGCC-UGGguu -5'
14636 3' -57 NC_003521.1 + 143161 0.68 0.858858
Target:  5'- cUCGAcGAUCCcguGGGgGuCGGACCCGg -3'
miRNA:   3'- cAGCU-CUAGGu--CCUgCuGCCUGGGUu -5'
14636 3' -57 NC_003521.1 + 147156 0.7 0.797302
Target:  5'- -cCGGGGUCCGGGACaGGggaauuuuggcaaccCGGACCCc- -3'
miRNA:   3'- caGCUCUAGGUCCUG-CU---------------GCCUGGGuu -5'
14636 3' -57 NC_003521.1 + 148511 0.67 0.885002
Target:  5'- -aUGGGAUCCGGGACGGgGGugggggaggguuuuACCUGAc -3'
miRNA:   3'- caGCUCUAGGUCCUGCUgCC--------------UGGGUU- -5'
14636 3' -57 NC_003521.1 + 173333 0.68 0.880268
Target:  5'- -aCGAGGU-CGGGAgUGACGGACCUc- -3'
miRNA:   3'- caGCUCUAgGUCCU-GCUGCCUGGGuu -5'
14636 3' -57 NC_003521.1 + 176465 0.68 0.873332
Target:  5'- cUCGGGcauGUCCAGGGCGcccaGGGCCUg- -3'
miRNA:   3'- cAGCUC---UAGGUCCUGCug--CCUGGGuu -5'
14636 3' -57 NC_003521.1 + 187516 0.66 0.932558
Target:  5'- -aCGAGAcggcuccUCCGGGACGACcgauaaugaGcGGCCCGu -3'
miRNA:   3'- caGCUCU-------AGGUCCUGCUG---------C-CUGGGUu -5'
14636 3' -57 NC_003521.1 + 188511 0.69 0.82766
Target:  5'- -cCGAGAUaCgAGGAggcCGGCGGGCCCc- -3'
miRNA:   3'- caGCUCUA-GgUCCU---GCUGCCUGGGuu -5'
14636 3' -57 NC_003521.1 + 190534 0.68 0.873332
Target:  5'- -gCGAGGUgCGGcGgcagcaGCGGCGGACCCGg -3'
miRNA:   3'- caGCUCUAgGUC-C------UGCUGCCUGGGUu -5'
14636 3' -57 NC_003521.1 + 194640 0.71 0.716256
Target:  5'- uUUGAGcuguccuuccgcuUCCAGGACGACGaGCCCGAg -3'
miRNA:   3'- cAGCUCu------------AGGUCCUGCUGCcUGGGUU- -5'
14636 3' -57 NC_003521.1 + 196967 0.71 0.710476
Target:  5'- -cCGGGAgccggCCGGGGCgccuguGACGGGCCCGc -3'
miRNA:   3'- caGCUCUa----GGUCCUG------CUGCCUGGGUu -5'
14636 3' -57 NC_003521.1 + 214811 0.69 0.826845
Target:  5'- cGUCGGGcgCCGGGcgcggcgACGGCGGuuCCAu -3'
miRNA:   3'- -CAGCUCuaGGUCC-------UGCUGCCugGGUu -5'
14636 3' -57 NC_003521.1 + 229064 0.68 0.880268
Target:  5'- -aUGAGccguccCCAGGGCGAguCGGGCCCGu -3'
miRNA:   3'- caGCUCua----GGUCCUGCU--GCCUGGGUu -5'
14636 3' -57 NC_003521.1 + 230420 0.67 0.886999
Target:  5'- uUUGAGAUgCGGGGCGacGCGGuAUCCAu -3'
miRNA:   3'- cAGCUCUAgGUCCUGC--UGCC-UGGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.