miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14636 3' -57 NC_003521.1 + 4262 0.69 0.811039
Target:  5'- -aCGAGA---AGGACGGCGGAgCCGAc -3'
miRNA:   3'- caGCUCUaggUCCUGCUGCCUgGGUU- -5'
14636 3' -57 NC_003521.1 + 5913 0.71 0.710476
Target:  5'- --gGAGGUCCGcGuGACcuGACGGACCCGAg -3'
miRNA:   3'- cagCUCUAGGU-C-CUG--CUGCCUGGGUU- -5'
14636 3' -57 NC_003521.1 + 15251 0.71 0.729644
Target:  5'- -cCGAGcgCCAGGACGAcaCGGGuCCCc- -3'
miRNA:   3'- caGCUCuaGGUCCUGCU--GCCU-GGGuu -5'
14636 3' -57 NC_003521.1 + 16784 0.67 0.886999
Target:  5'- --aGAG-UCCcaGGGGCGACGGcGCCCGc -3'
miRNA:   3'- cagCUCuAGG--UCCUGCUGCC-UGGGUu -5'
14636 3' -57 NC_003521.1 + 31946 0.7 0.757783
Target:  5'- cUCGGGGUCCAGGAacaGGCacauGGugCCGu -3'
miRNA:   3'- cAGCUCUAGGUCCUg--CUG----CCugGGUu -5'
14636 3' -57 NC_003521.1 + 33665 0.67 0.917436
Target:  5'- -gCGGGAUCCAGcGAcCGGcCGuGGCCCGc -3'
miRNA:   3'- caGCUCUAGGUC-CU-GCU-GC-CUGGGUu -5'
14636 3' -57 NC_003521.1 + 35973 0.68 0.873332
Target:  5'- -cCGAGAUCCGGGugGACuacACCUc- -3'
miRNA:   3'- caGCUCUAGGUCCugCUGcc-UGGGuu -5'
14636 3' -57 NC_003521.1 + 41627 0.67 0.899826
Target:  5'- -cCGuGGUCUGGGGCGugGcGCCCGu -3'
miRNA:   3'- caGCuCUAGGUCCUGCugCcUGGGUu -5'
14636 3' -57 NC_003521.1 + 48684 0.66 0.937803
Target:  5'- -aCGuGGAUCCGcGGAcgcCGACGGAgCCGAc -3'
miRNA:   3'- caGC-UCUAGGU-CCU---GCUGCCUgGGUU- -5'
14636 3' -57 NC_003521.1 + 52220 0.66 0.928066
Target:  5'- -aCGGGggCCgguAGGGCGGCGGGCUa-- -3'
miRNA:   3'- caGCUCuaGG---UCCUGCUGCCUGGguu -5'
14636 3' -57 NC_003521.1 + 52307 0.66 0.931575
Target:  5'- cGUgGGGcccgCCGGccuccucguaucucGGCGGCGGACCCAGg -3'
miRNA:   3'- -CAgCUCua--GGUC--------------CUGCUGCCUGGGUU- -5'
14636 3' -57 NC_003521.1 + 59866 0.73 0.592464
Target:  5'- gGUgGAGAUCCAGGACcccGCGGACUa-- -3'
miRNA:   3'- -CAgCUCUAGGUCCUGc--UGCCUGGguu -5'
14636 3' -57 NC_003521.1 + 70030 0.74 0.543738
Target:  5'- uUgGGGAUCCaacGGGACGugGGGCgCCAAg -3'
miRNA:   3'- cAgCUCUAGG---UCCUGCugCCUG-GGUU- -5'
14636 3' -57 NC_003521.1 + 73890 0.68 0.858858
Target:  5'- -cCGAGAUCCgcaAGGcCGugGGcCCCGu -3'
miRNA:   3'- caGCUCUAGG---UCCuGCugCCuGGGUu -5'
14636 3' -57 NC_003521.1 + 79064 0.68 0.858858
Target:  5'- --gGGGGUCCGGGGCu-CGGGCaCCAGc -3'
miRNA:   3'- cagCUCUAGGUCCUGcuGCCUG-GGUU- -5'
14636 3' -57 NC_003521.1 + 87091 0.72 0.671461
Target:  5'- gGUUGAGGUCCAGGuugaaggccuGCGugGcGCCCAc -3'
miRNA:   3'- -CAGCUCUAGGUCC----------UGCugCcUGGGUu -5'
14636 3' -57 NC_003521.1 + 91856 0.69 0.819429
Target:  5'- ------cUCCAGGGCGGCGGACCa-- -3'
miRNA:   3'- cagcucuAGGUCCUGCUGCCUGGguu -5'
14636 3' -57 NC_003521.1 + 91912 0.74 0.531269
Target:  5'- -cCG-GAUCCAGGACGGCGGcggcgaugcgguggACCCGg -3'
miRNA:   3'- caGCuCUAGGUCCUGCUGCC--------------UGGGUu -5'
14636 3' -57 NC_003521.1 + 94189 0.66 0.937338
Target:  5'- cGUCGuGG-CCGGGgcccuugaagacgACGACGGGCUCGu -3'
miRNA:   3'- -CAGCuCUaGGUCC-------------UGCUGCCUGGGUu -5'
14636 3' -57 NC_003521.1 + 99317 0.68 0.843618
Target:  5'- ---cAGGUCCGGGACGagGCGGGCCa-- -3'
miRNA:   3'- cagcUCUAGGUCCUGC--UGCCUGGguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.