miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14636 5' -61.4 NC_003521.1 + 93111 0.68 0.651712
Target:  5'- gAGCUGGGGuuGGCGguUUGGgauucgguuuCUGgGGa -3'
miRNA:   3'- -UCGGCCUCggCCGCguAACC----------GACgUC- -5'
14636 5' -61.4 NC_003521.1 + 119893 0.68 0.651712
Target:  5'- cGCCGGAGCCGcCGCcgcgGGCaGCc- -3'
miRNA:   3'- uCGGCCUCGGCcGCGuaa-CCGaCGuc -5'
14636 5' -61.4 NC_003521.1 + 30222 0.68 0.642005
Target:  5'- cGGCCGGccGuuGGCGUcgc-GCUGCAGg -3'
miRNA:   3'- -UCGGCCu-CggCCGCGuaacCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 120598 0.68 0.642005
Target:  5'- cGCCGGcuccuGCCGGUaGCGUcugcguuuUGGCaGCGGg -3'
miRNA:   3'- uCGGCCu----CGGCCG-CGUA--------ACCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 96610 0.68 0.632291
Target:  5'- aGGCaGGcGUCGGCGCAcu-GCUGCAGc -3'
miRNA:   3'- -UCGgCCuCGGCCGCGUaacCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 239830 0.68 0.632291
Target:  5'- aAGCCGuacGGCCGGCcCAgcGGgaGCAGa -3'
miRNA:   3'- -UCGGCc--UCGGCCGcGUaaCCgaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 148939 0.68 0.632291
Target:  5'- cGCCGu-GCUGGCGCGUguGCUGCuGg -3'
miRNA:   3'- uCGGCcuCGGCCGCGUAacCGACGuC- -5'
14636 5' -61.4 NC_003521.1 + 188031 0.68 0.632291
Target:  5'- cGUCGGAcaucaGCCGGUGCAgcgGGUUGUc- -3'
miRNA:   3'- uCGGCCU-----CGGCCGCGUaa-CCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 170869 0.68 0.632291
Target:  5'- cGCgGGGGCgGGCGCGggUGGUcagGCGu -3'
miRNA:   3'- uCGgCCUCGgCCGCGUa-ACCGa--CGUc -5'
14636 5' -61.4 NC_003521.1 + 39603 0.68 0.632291
Target:  5'- aAGCCGuacGGCCGGCcCAgcGGgaGCAGa -3'
miRNA:   3'- -UCGGCc--UCGGCCGcGUaaCCgaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 168065 0.68 0.632291
Target:  5'- cGGCgGGuGCuCGaGaCGCGgggGGCUGCAGa -3'
miRNA:   3'- -UCGgCCuCG-GC-C-GCGUaa-CCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 236253 0.68 0.622576
Target:  5'- -aCCGGAgGCCGGCGUGUgccccGGCcGUAGu -3'
miRNA:   3'- ucGGCCU-CGGCCGCGUAa----CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 46560 0.68 0.622576
Target:  5'- cGCCGGGuGCUGaaGCggUGGUUGCGGu -3'
miRNA:   3'- uCGGCCU-CGGCcgCGuaACCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 113976 0.68 0.612869
Target:  5'- cGGCaGGcGGCCGGCcggGCAccGGCUGCAa -3'
miRNA:   3'- -UCGgCC-UCGGCCG---CGUaaCCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 195191 0.68 0.612869
Target:  5'- --gCGGAGCCGGCGgCggUGGCcgucUGCGu -3'
miRNA:   3'- ucgGCCUCGGCCGC-GuaACCG----ACGUc -5'
14636 5' -61.4 NC_003521.1 + 221906 0.68 0.610929
Target:  5'- uGCCGGcGCgCGGCGCcacccuucggGGCUGCc- -3'
miRNA:   3'- uCGGCCuCG-GCCGCGuaa-------CCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 152209 0.69 0.603174
Target:  5'- -cCCGGAcGaggucaCGGCGCAcgUGGCUGUGGg -3'
miRNA:   3'- ucGGCCU-Cg-----GCCGCGUa-ACCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 175790 0.69 0.597366
Target:  5'- uAGCCGGGGCUGcacgcgggccaggauGCGCGUgcuaggGGC-GCGGu -3'
miRNA:   3'- -UCGGCCUCGGC---------------CGCGUAa-----CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 135327 0.69 0.593499
Target:  5'- aGGCCGGGGUCGG-GCg--GGUUGCc- -3'
miRNA:   3'- -UCGGCCUCGGCCgCGuaaCCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 129065 0.69 0.593499
Target:  5'- cGCCcuuGAGCUGGCGCAgacccucGGCguacUGCAGg -3'
miRNA:   3'- uCGGc--CUCGGCCGCGUaa-----CCG----ACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.